Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SAEMRSA15_RS10490 Genome accession   NC_017763
Coordinates   2075972..2076442 (-) Length   156 a.a.
NCBI ID   WP_000610647.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus HO 5096 0412     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2070972..2081442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAEMRSA15_RS10430 (SAEMRSA15_18940) - 2071002..2071256 (-) 255 WP_001065084.1 DUF1024 family protein -
  SAEMRSA15_RS10435 (SAEMRSA15_18950) - 2071249..2071533 (-) 285 WP_001105621.1 hypothetical protein -
  SAEMRSA15_RS10445 (SAEMRSA15_18970) - 2071711..2072840 (+) 1130 WP_094752959.1 IS3 family transposase -
  SAEMRSA15_RS10450 (SAEMRSA15_18980) - 2072837..2073205 (-) 369 WP_000982709.1 YopX family protein -
  SAEMRSA15_RS15445 (SAEMRSA15_18990) - 2073202..2073396 (-) 195 WP_000983954.1 hypothetical protein -
  SAEMRSA15_RS10460 (SAEMRSA15_19000) - 2073393..2073779 (-) 387 WP_000693615.1 hypothetical protein -
  SAEMRSA15_RS10465 (SAEMRSA15_19010) - 2073793..2074035 (-) 243 WP_000131377.1 phi PVL orf 51-like protein -
  SAEMRSA15_RS10470 (SAEMRSA15_19020) - 2074039..2074407 (-) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  SAEMRSA15_RS10475 (SAEMRSA15_19030) - 2074420..2074824 (-) 405 WP_000401966.1 RusA family crossover junction endodeoxyribonuclease -
  SAEMRSA15_RS10480 (SAEMRSA15_19040) - 2074833..2075051 (-) 219 WP_000338528.1 hypothetical protein -
  SAEMRSA15_RS10485 (SAEMRSA15_19050) - 2075058..2075942 (-) 885 WP_000148299.1 DnaD domain protein -
  SAEMRSA15_RS10490 (SAEMRSA15_19060) ssbA 2075972..2076442 (-) 471 WP_000610647.1 single-stranded DNA-binding protein Machinery gene
  SAEMRSA15_RS10495 (SAEMRSA15_19070) - 2076443..2077060 (-) 618 WP_072528355.1 MBL fold metallo-hydrolase -
  SAEMRSA15_RS10500 (SAEMRSA15_19080) - 2077141..2078061 (-) 921 WP_000138481.1 recombinase RecT -
  SAEMRSA15_RS10505 (SAEMRSA15_19090) - 2078063..2080006 (-) 1944 WP_000700571.1 AAA family ATPase -
  SAEMRSA15_RS14880 (SAEMRSA15_19100) - 2080015..2080278 (-) 264 WP_001205732.1 hypothetical protein -
  SAEMRSA15_RS10510 (SAEMRSA15_19110) - 2080287..2080547 (-) 261 WP_000291488.1 DUF1108 family protein -
  SAEMRSA15_RS10515 (SAEMRSA15_19120) - 2080640..2080801 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  SAEMRSA15_RS10520 (SAEMRSA15_19130) - 2080798..2081118 (-) 321 WP_001120936.1 DUF771 domain-containing protein -
  SAEMRSA15_RS15450 (SAEMRSA15_19140) - 2081172..2081327 (+) 156 Protein_1998 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=50696 SAEMRSA15_RS10490 WP_000610647.1 2075972..2076442(-) (ssbA) [Staphylococcus aureus subsp. aureus HO 5096 0412]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=50696 SAEMRSA15_RS10490 WP_000610647.1 2075972..2076442(-) (ssbA) [Staphylococcus aureus subsp. aureus HO 5096 0412]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGCAGATTACAAACGCGT
AACTATGAAAACAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAGTTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment