Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VB13_RS08295 Genome accession   NZ_CP077685
Coordinates   1694291..1694887 (-) Length   198 a.a.
NCBI ID   WP_009880529.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M49 591     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1689291..1699887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS08260 (VB13_08510) - 1689351..1689656 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  VB13_RS08265 (VB13_08515) ruvX 1689668..1690087 (-) 420 WP_012561069.1 Holliday junction resolvase RuvX -
  VB13_RS08270 (VB13_08520) - 1690084..1690353 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  VB13_RS08275 (VB13_08530) spx 1690467..1690865 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  VB13_RS08280 (VB13_08535) recA 1691156..1692292 (-) 1137 WP_002992179.1 recombinase RecA Machinery gene
  VB13_RS08285 (VB13_08540) cinA 1692381..1693652 (-) 1272 WP_009880527.1 competence/damage-inducible protein A Machinery gene
  VB13_RS08290 (VB13_08545) - 1693721..1694281 (-) 561 WP_009880528.1 DNA-3-methyladenine glycosylase I -
  VB13_RS08295 (VB13_08550) ruvA 1694291..1694887 (-) 597 WP_009880529.1 Holliday junction branch migration protein RuvA Machinery gene
  VB13_RS08300 (VB13_08555) - 1694889..1696109 (-) 1221 WP_002992187.1 MFS transporter -
  VB13_RS08305 (VB13_08560) hexB 1696120..1698102 (-) 1983 WP_009880530.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21825.13 Da        Isoelectric Point: 6.1092

>NTDB_id=506909 VB13_RS08295 WP_009880529.1 1694291..1694887(-) (ruvA) [Streptococcus pyogenes strain M49 591]
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGNTQLDEAIEAL
LALGYTATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=506909 VB13_RS08295 WP_009880529.1 1694291..1694887(-) (ruvA) [Streptococcus pyogenes strain M49 591]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAGCTAATGGATTGGGCTACAT
GATTAATGTTGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAATTGGTAACCATTTATCTGCATCAAGTGATTCGTG
AGGATGCTCACCTGTTGTTTGGTTTTCACACGGAAGATGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGTATT
GGTCCGACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTCATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATACAGCAACAGAGCTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATA
CATCAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae R6

65.99

99.495

0.657
  ruvA Streptococcus pneumoniae D39

65.99

99.495

0.657
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.414