NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	KQY30_RS09065	Genome accession	NZ_CP077658
Coordinates	2194401..2195873 (-)	Length	490 a.a.
NCBI ID	WP_254407028.1	Uniprot ID	-
Organism	Streptomyces sp. GMY02
Function	DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2189401..2200873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQY30_RS09040 (KQY30_09040)	rpsB	2189659..2190555 (-)	897	WP_217306395.1	30S ribosomal protein S2	-
KQY30_RS09045 (KQY30_09045)	-	2190976..2191419 (+)	444	Protein_1831	peptidoglycan DD-metalloendopeptidase family protein	-
KQY30_RS09050 (KQY30_09050)	-	2191541..2192080 (-)	540	WP_217310918.1	TetR/AcrR family transcriptional regulator	-
KQY30_RS09055 (KQY30_09055)	whiG	2192160..2192996 (-)	837	WP_217306396.1	RNA polymerase sigma factor WhiG	-
KQY30_RS09060 (KQY30_09060)	dprA	2193238..2194404 (-)	1167	WP_217306397.1	DNA-processing protein DprA	-
KQY30_RS09065 (KQY30_09065)	comM	2194401..2195873 (-)	1473	WP_254407028.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
KQY30_RS09070 (KQY30_09070)	-	2195920..2197449 (+)	1530	WP_217306398.1	integrase	-
KQY30_RS09075 (KQY30_09075)	-	2197527..2199179 (+)	1653	WP_254407029.1	hypothetical protein	-

Sequence

Protein

Download Length: 490 a.a. Molecular weight: 50532.93 Da Isoelectric Point: 7.8185

                                >NTDB_id=506766 KQY30_RS09065 WP_254407028.1 2194401..2195873(-) (comM) [Streptomyces sp. GMY02]

MVNSGAEWPQKKLTVGLSPASVPKSGSGFDLAVAAAVLGAAERIDPRTIADLVLIGELGLDGRVRPVRGVLPAVLAAAEA

GYQQVVVPEQTAGEAALVPGVSVLGVRSLRQLIAVLTDDAVPDEPRDTVAGRPDAMLAGLMVPGAGVGTGLAAGNGQSEG

HRPDLADVAGQAPARTALEVAAAGGHHLLLQGPPGAGKTMLAERLPGVLPPLTRQESLEVTAVHSVAGILPPGEPLVRTP

PYCAPHHSATMQSLVGGGNGLPRPGAVSLAHRGVLFLDEAPEFSGRALDALRQPLESGHVVVARSAGVVRLPARFLMILA

ANPCPCGRHTLHGAGCECPPSAIRRYQSRLSGPLLDRVDLRVDVRPVHREDLIGQGGRGEPTAAVAERVRDARARSAARL

DGTPWAVNSEVPGHELRTRWPVASGALAAAERDLERGLLTARGLDRVLRVAWTVADLAGRDRPEARDVALALELRTGIAR

GAVPVAGGVT

Nucleotide

Download Length: 1473 bp

                                >NTDB_id=506766 KQY30_RS09065 WP_254407028.1 2194401..2195873(-) (comM) [Streptomyces sp. GMY02]

GTGGTGAACTCGGGCGCCGAGTGGCCGCAGAAGAAACTCACGGTCGGGCTGAGCCCCGCTTCCGTACCGAAGAGCGGCAG

CGGATTCGATCTCGCCGTCGCGGCGGCGGTGCTCGGGGCTGCCGAGCGTATCGATCCCCGGACCATTGCCGATCTGGTGC

TGATCGGGGAGCTGGGCCTGGACGGACGGGTCAGACCGGTGCGCGGGGTGCTGCCCGCGGTGCTCGCGGCGGCCGAGGCC

GGTTACCAGCAGGTGGTGGTTCCCGAGCAGACCGCGGGCGAGGCGGCCCTGGTGCCGGGCGTGTCGGTCCTCGGGGTACG

GAGCCTGCGGCAGCTCATCGCCGTGCTGACCGACGACGCGGTGCCCGACGAGCCCCGGGACACCGTGGCGGGGCGCCCGG

ACGCGATGCTGGCGGGTCTGATGGTGCCGGGCGCGGGGGTCGGCACGGGACTGGCGGCCGGCAACGGCCAGAGCGAGGGA

CACCGGCCCGACCTCGCGGACGTCGCCGGGCAGGCTCCCGCCCGTACGGCCCTGGAAGTGGCCGCGGCGGGCGGTCACCA

CCTGCTCCTCCAGGGCCCGCCGGGTGCGGGCAAGACCATGCTGGCCGAGCGGCTGCCCGGGGTGCTGCCGCCCCTGACCC

GGCAGGAGTCGCTGGAGGTCACGGCGGTGCACTCGGTGGCGGGCATCCTGCCGCCCGGCGAGCCCCTGGTCCGTACGCCG

CCCTACTGCGCACCGCACCACTCGGCCACCATGCAGTCCCTGGTCGGCGGCGGCAACGGACTGCCGAGACCGGGCGCGGT

GTCCCTGGCTCACCGAGGTGTGCTTTTTCTGGACGAGGCGCCGGAGTTCTCGGGGCGGGCCCTGGACGCTCTGCGCCAGC

CGCTGGAATCGGGGCACGTGGTGGTGGCACGCAGCGCGGGGGTGGTGCGGCTCCCTGCCCGTTTCCTGATGATCCTCGCC

GCCAATCCCTGCCCCTGCGGTCGGCACACCCTGCACGGCGCCGGATGCGAATGCCCGCCCTCGGCGATCCGCCGCTACCA

GTCGCGGCTGTCCGGGCCGCTGCTGGACCGGGTGGATCTGCGTGTCGATGTCCGGCCCGTCCACCGCGAGGACCTGATCG

GACAGGGCGGCAGGGGCGAGCCCACGGCGGCGGTCGCCGAGCGGGTACGGGACGCCAGGGCGCGGTCGGCGGCCCGGCTG

GACGGCACACCCTGGGCCGTCAACAGCGAGGTGCCCGGCCATGAGCTGCGCACCCGCTGGCCGGTCGCTTCCGGCGCGCT

TGCCGCGGCCGAACGCGATCTGGAGCGCGGACTGCTCACCGCGCGCGGCCTGGACCGGGTGCTGCGGGTGGCCTGGACCG

TCGCGGATCTCGCCGGGCGCGACCGCCCAGAGGCCCGGGATGTCGCGCTCGCGCTGGAACTGCGCACCGGTATCGCCCGG

GGCGCCGTGCCGGTGGCCGGAGGTGTGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(379-475)

Subunit ChlI of Mg-chelatase (ChlI)

(3-90)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(164-371)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio campbellii strain DS40M4	39.789	96.939	0.386
comM	Acinetobacter baylyi ADP1	39.286	97.143	0.382
comM	Vibrio cholerae O1 biovar El Tor strain E7946	39.869	93.673	0.373
comM	Vibrio cholerae strain A1552	39.869	93.673	0.373
comM	Glaesserella parasuis strain SC1401	36.345	99.388	0.361

Detailed information NTG0506766