Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SCI_RS09475 Genome accession   NC_022238
Coordinates   1893072..1893662 (-) Length   196 a.a.
NCBI ID   WP_006269179.1    Uniprot ID   F9PAB6
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1888072..1898662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS09455 (SCI_1843) - 1888173..1890182 (-) 2010 WP_020998095.1 hypothetical protein -
  SCI_RS10400 (SCI_1844) - 1890280..1890549 (-) 270 WP_020998096.1 hypothetical protein -
  SCI_RS09460 (SCI_1845) - 1890932..1891786 (+) 855 WP_006269187.1 Rgg/GadR/MutR family transcriptional regulator -
  SCI_RS09465 (SCI_1846) - 1891947..1892360 (+) 414 WP_006269778.1 EamA family transporter -
  SCI_RS09470 (SCI_1847) - 1892498..1893061 (-) 564 WP_006269031.1 DNA-3-methyladenine glycosylase I -
  SCI_RS09475 (SCI_1848) ruvA 1893072..1893662 (-) 591 WP_006269179.1 Holliday junction branch migration protein RuvA Machinery gene
  SCI_RS09480 (SCI_1849) hexB 1894048..1895994 (-) 1947 WP_020998097.1 DNA mismatch repair endonuclease MutL Machinery gene
  SCI_RS09485 (SCI_1850) - 1896253..1896681 (+) 429 WP_006269102.1 LytTR family DNA-binding domain-containing protein -
  SCI_RS09490 (SCI_1851) - 1896678..1897136 (+) 459 WP_020998098.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21542.91 Da        Isoelectric Point: 5.3389

>NTDB_id=50675 SCI_RS09475 WP_006269179.1 1893072..1893662(-) (ruvA) [Streptococcus constellatus subsp. pharyngis C1050]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFGTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGAPAESKVSVQTADNQELEEAMEAML
ALGYRAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=50675 SCI_RS09475 WP_006269179.1 1893072..1893662(-) (ruvA) [Streptococcus constellatus subsp. pharyngis C1050]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTTAGAG
AGGATGCCCAGCTCCTCTACGGTTTTGGCACAGAAGATGAAAAACAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGCCCCGTTTCTGCTCTTGCGATAATCGCAGCCGATGATAATGCTGGATTGGTGCAAGCCATTGAGCAGAAAAACATCAC
CTATCTGACCAAGTTTCCCAAGATAGGCAAAAAGACAGCCCAGCAGATGGTGTTGGACTTGGAAGGTAAAGTGGTAGCAA
CAGGTGCGCCAGCGGAAAGCAAGGTTTCCGTCCAGACTGCAGATAATCAGGAGTTGGAAGAAGCCATGGAAGCCATGCTG
GCTCTGGGCTACAGGGCTGCTGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACGACAGATACAGCTGAAAACTACAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9PAB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

84.772

100

0.852
  ruvA Streptococcus pneumoniae R6

84.772

100

0.852
  ruvA Streptococcus pneumoniae D39

84.772

100

0.852
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.951

100

0.439

Multiple sequence alignment