Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2437_RS07940 Genome accession   NZ_CP065061
Coordinates   1690492..1690980 (-) Length   162 a.a.
NCBI ID   WP_038674547.1    Uniprot ID   A0A380JNM1
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1685492..1695980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2437_RS07920 (IEMOCGPF_01585) - 1687974..1688918 (+) 945 WP_043025211.1 magnesium transporter CorA family protein -
  I2437_RS07925 - 1688943..1689080 (-) 138 WP_206157803.1 hypothetical protein -
  I2437_RS07930 (IEMOCGPF_01586) - 1689177..1689827 (+) 651 WP_043051947.1 DUF1129 domain-containing protein -
  I2437_RS07935 (IEMOCGPF_01587) rpsR 1690094..1690333 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  I2437_RS07940 (IEMOCGPF_01588) ssbA 1690492..1690980 (-) 489 WP_038674547.1 single-stranded DNA-binding protein Machinery gene
  I2437_RS07945 (IEMOCGPF_01589) rpsF 1690999..1691289 (-) 291 WP_012678504.1 30S ribosomal protein S6 -
  I2437_RS07950 - 1692352..1692550 (-) 199 Protein_1514 HicB family protein -
  I2437_RS07955 (IEMOCGPF_01590) mutY 1692666..1693814 (+) 1149 WP_206157804.1 A/G-specific adenine glycosylase -
  I2437_RS07960 (IEMOCGPF_01591) - 1694107..1694391 (+) 285 WP_041785270.1 hypothetical protein -
  I2437_RS07965 (IEMOCGPF_01592) - 1694611..1695558 (+) 948 WP_244955889.1 cell surface-anchored protein -
  I2437_RS09655 - 1695638..1695781 (+) 144 WP_244955890.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17822.66 Da        Isoelectric Point: 4.9008

>NTDB_id=506620 I2437_RS07940 WP_038674547.1 1690492..1690980(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=506620 I2437_RS07940 WP_038674547.1 1690492..1690980(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ33]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGCTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JNM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377