Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KTN06_RS17945 Genome accession   NZ_CP077646
Coordinates   3726442..3727179 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ST866     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3721442..3732179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTN06_RS17920 (KTN06_17915) tyrA 3721816..3722937 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KTN06_RS17925 (KTN06_17920) pheA 3722980..3724140 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  KTN06_RS17930 (KTN06_17925) pheL 3724239..3724286 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KTN06_RS17935 (KTN06_17930) raiA 3724390..3724731 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KTN06_RS17940 (KTN06_17935) - 3725063..3726391 (+) 1329 WP_000547316.1 IS4-like element IS4 family transposase -
  KTN06_RS17945 (KTN06_17940) comL 3726442..3727179 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KTN06_RS17950 (KTN06_17945) rluD 3727314..3728294 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KTN06_RS17955 (KTN06_17950) yfiH 3728291..3729022 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  KTN06_RS17960 (KTN06_17955) clpC 3729152..3731725 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=506596 KTN06_RS17945 WP_000197686.1 3726442..3727179(-) (comL) [Escherichia coli strain ST866]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=506596 KTN06_RS17945 WP_000197686.1 3726442..3727179(-) (comL) [Escherichia coli strain ST866]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGAGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376