Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HCN_RS10085 Genome accession   NC_017761
Coordinates   1984549..1985334 (-) Length   261 a.a.
NCBI ID   WP_014667435.1    Uniprot ID   -
Organism   Helicobacter cinaedi PAGU611     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1979549..1990334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN_RS10065 (HCN_2005) speA 1979905..1981755 (-) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -
  HCN_RS10070 (HCN_2006) ybeY 1981880..1982545 (+) 666 WP_231997565.1 rRNA maturation RNase YbeY -
  HCN_RS11365 - 1983206..1983448 (+) 243 WP_133246272.1 hypothetical protein -
  HCN_RS10075 (HCN_2007) - 1983386..1984027 (-) 642 WP_014667434.1 TetR/AcrR family transcriptional regulator -
  HCN_RS10080 (HCN_2008) dprB 1984127..1984549 (-) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  HCN_RS10085 (HCN_2009) dprA 1984549..1985334 (-) 786 WP_014667435.1 DNA-processing protein DprA Machinery gene
  HCN_RS10090 (HCN_2010) - 1985371..1986453 (-) 1083 WP_014667624.1 divergent polysaccharide deacetylase family protein -
  HCN_RS10095 (HCN_2011) minE 1986454..1986705 (-) 252 WP_014667625.1 cell division topological specificity factor MinE -
  HCN_RS10100 (HCN_2012) minD 1986702..1987517 (-) 816 WP_014667436.1 septum site-determining protein MinD -
  HCN_RS10105 (HCN_2013) - 1987584..1988135 (-) 552 WP_014667437.1 hypothetical protein -
  HCN_RS10110 (HCN_2014) - 1988135..1989049 (-) 915 WP_014667438.1 type II restriction endonuclease -
  HCN_RS10115 (HCN_2015) - 1989055..1990260 (-) 1206 WP_014667439.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29122.00 Da        Isoelectric Point: 8.7183

>NTDB_id=50658 HCN_RS10085 WP_014667435.1 1984549..1985334(-) (dprA) [Helicobacter cinaedi PAGU611]
MKADIQSLESIPLNLKALKNPPKKLFYKGGALDSLLQAQPKIAIVGTRKPNPYTKSFVAKLASNIAKLQGVVVSGGAIGV
DIIAHIHAFPRTIMFSPSSLDIYYPRSNKTMIEKMMQECAVISEYESPYMPHRFSFLERNRLVIALSDVVIIPQADKQSG
SMQSARIACELKKELFVLPHRLGESDGTQELLAKGKAQCIYDINAFLEGIFGVKLQENDEVLAFCMKNPSFEEAYLKFGE
KIYEYELEGKIVRESGSIRVL

Nucleotide


Download         Length: 786 bp        

>NTDB_id=50658 HCN_RS10085 WP_014667435.1 1984549..1985334(-) (dprA) [Helicobacter cinaedi PAGU611]
ATGAAAGCAGATATACAATCTTTAGAATCTATCCCTTTAAATCTTAAAGCATTAAAAAATCCACCAAAAAAGCTTTTTTA
TAAGGGTGGGGCATTAGATTCACTGCTTCAAGCACAGCCTAAAATCGCCATTGTCGGCACAAGAAAGCCTAATCCTTACA
CAAAGTCCTTTGTTGCTAAACTCGCTTCAAATATCGCAAAGCTTCAAGGTGTAGTGGTGAGCGGAGGGGCGATTGGTGTG
GATATTATCGCACATATTCACGCTTTTCCACGCACGATAATGTTCTCCCCCTCAAGCCTAGATATTTACTATCCGCGTTC
AAATAAAACAATGATTGAAAAAATGATGCAAGAATGTGCGGTAATAAGCGAGTATGAAAGCCCATATATGCCCCATAGAT
TTAGCTTTTTAGAACGCAATCGGCTTGTGATTGCCCTAAGTGATGTGGTGATTATCCCCCAAGCAGATAAGCAAAGTGGC
TCAATGCAGAGTGCTAGAATCGCCTGTGAGCTTAAAAAAGAGCTTTTTGTCCTGCCTCATCGTTTGGGGGAGAGTGATGG
GACACAAGAGCTTTTAGCCAAGGGCAAGGCACAATGTATTTATGATATAAATGCGTTTTTGGAAGGGATTTTTGGCGTGA
AATTGCAAGAAAATGATGAGGTTTTGGCATTTTGTATGAAGAATCCTAGCTTTGAGGAGGCGTATTTAAAATTTGGTGAA
AAGATTTATGAATACGAGCTTGAAGGCAAAATCGTGCGTGAATCTGGAAGCATACGGGTGCTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

55

99.617

0.548
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.362

90.038

0.444

Multiple sequence alignment