Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HCN_RS10080 Genome accession   NC_017761
Coordinates   1984127..1984549 (-) Length   140 a.a.
NCBI ID   WP_002955972.1    Uniprot ID   -
Organism   Helicobacter cinaedi PAGU611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1979127..1989549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN_RS10060 (HCN_2004) cysE 1979133..1979891 (-) 759 WP_014667432.1 serine O-acetyltransferase -
  HCN_RS10065 (HCN_2005) speA 1979905..1981755 (-) 1851 WP_002955968.1 biosynthetic arginine decarboxylase -
  HCN_RS10070 (HCN_2006) ybeY 1981880..1982545 (+) 666 WP_231997565.1 rRNA maturation RNase YbeY -
  HCN_RS11365 - 1983206..1983448 (+) 243 WP_133246272.1 hypothetical protein -
  HCN_RS10075 (HCN_2007) - 1983386..1984027 (-) 642 WP_014667434.1 TetR/AcrR family transcriptional regulator -
  HCN_RS10080 (HCN_2008) dprB 1984127..1984549 (-) 423 WP_002955972.1 Holliday junction resolvase RuvX Machinery gene
  HCN_RS10085 (HCN_2009) dprA 1984549..1985334 (-) 786 WP_014667435.1 DNA-processing protein DprA Machinery gene
  HCN_RS10090 (HCN_2010) - 1985371..1986453 (-) 1083 WP_014667624.1 divergent polysaccharide deacetylase family protein -
  HCN_RS10095 (HCN_2011) minE 1986454..1986705 (-) 252 WP_014667625.1 cell division topological specificity factor MinE -
  HCN_RS10100 (HCN_2012) minD 1986702..1987517 (-) 816 WP_014667436.1 septum site-determining protein MinD -
  HCN_RS10105 (HCN_2013) - 1987584..1988135 (-) 552 WP_014667437.1 hypothetical protein -
  HCN_RS10110 (HCN_2014) - 1988135..1989049 (-) 915 WP_014667438.1 type II restriction endonuclease -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15456.94 Da        Isoelectric Point: 7.1676

>NTDB_id=50657 HCN_RS10080 WP_002955972.1 1984127..1984549(-) (dprB) [Helicobacter cinaedi PAGU611]
MENKKILACDVGLKRIGLAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEAGHSDTRKRILHFVG
LVAFGGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRLDSLSATLILERFLESNNPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=50657 HCN_RS10080 WP_002955972.1 1984127..1984549(-) (dprB) [Helicobacter cinaedi PAGU611]
ATGGAAAACAAAAAGATTCTAGCCTGTGATGTGGGGCTAAAAAGGATAGGTTTAGCGGTTACACAACTTGGCATTATCCT
GCCAATAGAGCCAATCATACGCAAAAATCGCAATCAAGCCTCTAAGGAACTAAGCGAGATATTAAAAACGCGTGAGATTG
AGATTCTAGTCGTTGGACTGCCAAGCGGTGGGGAAGCGGGGCATAGTGATACGCGTAAAAGAATCTTGCATTTTGTGGGG
CTTGTTGCATTTGGCGGGGAGATAGCCTATATTGATGAAGATTATACAAGCCTAGAGGCTTTGCAATCAAGTGCGTATAT
GGGAGTGCAAAATCGGCTTAAGATTCAAAAAGATGGGCGGCTAGATTCTCTTAGTGCGACTTTGATTTTAGAAAGATTTT
TAGAATCTAATAATCCTTTATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(5-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

53.077

92.857

0.493

Multiple sequence alignment