Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I2436_RS01235 Genome accession   NZ_CP065060
Coordinates   236645..238006 (+) Length   453 a.a.
NCBI ID   WP_012514884.1    Uniprot ID   B4U0R5
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231645..243006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS01220 (GDAKBCAL_00238) - 233227..235023 (+) 1797 WP_206152899.1 ABC transporter ATP-binding protein -
  I2436_RS01225 (GDAKBCAL_00239) - 235185..235952 (+) 768 WP_012678598.1 epoxyqueuosine reductase QueH -
  I2436_RS01230 (GDAKBCAL_00240) - 236132..236578 (+) 447 WP_012678597.1 dUTP diphosphatase -
  I2436_RS01235 (GDAKBCAL_00241) radA 236645..238006 (+) 1362 WP_012514884.1 DNA repair protein RadA Machinery gene
  I2436_RS01240 (GDAKBCAL_00242) - 238167..238442 (-) 276 WP_041785238.1 hypothetical protein -
  I2436_RS01245 (GDAKBCAL_00243) - 238773..239279 (+) 507 WP_012514885.1 carbonic anhydrase -
  I2436_RS01250 (GDAKBCAL_00244) - 239407..240120 (+) 714 WP_012514886.1 TIGR00266 family protein -
  I2436_RS01255 (GDAKBCAL_00245) gltX 240720..242165 (+) 1446 WP_206152900.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49333.77 Da        Isoelectric Point: 6.7545

>NTDB_id=506526 I2436_RS01235 WP_012514884.1 236645..238006(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEETEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDIPSGIEVVGVMTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=506526 I2436_RS01235 WP_012514884.1 236645..238006(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATAGCTAAGAAAAAGGCGAGGTTTATCTGTGGAGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGCTGCCCTAATTG
CTCTGCCTGGTCTTCCTTTGTAGAGGAGACAGAGGTCAAGGACGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACAGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGTGGTGTTGTGCCTGGGAGCTTGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACGCTACTCTTGCA
AGTTTCTATCCAGCTTGCGGATAAGGGAACTGTTCTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGATCGCTTGGGACAGACCGACAATGACTTTTACCTCTATGCGGAGACCAATATGCAGGCTATTCGGGCAGAGATTGAA
GCCATTCAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATCATGAGTCCGGAGATTTCGGGTGTTCAGGGCTCGGT
CAGTCAGGTGAGAGAGGTTACTGCTGAGCTACTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATCGTAGGACATG
TCACCAAGGAGGGTACCCTAGCAGGGCCACGTATGCTGGAGCATATGGTTGATACTGTGCTTTATTTTGAAGGGGAAAGA
CACCACACCTTCCGAATTCTGCGAGCTGTTAAAAACCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGCTTAGTGGAGGTTCTCAATCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCGGCTGTTG
TCGTTACAATGGAGGGCAGTAGGCCAATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGCAATGCTAGA
CGAACCACTACTGGATTAGACTTTAATCGTGTTAGCCTGATTATGGCTGTCCTAGAAAAGCGCTGCGGCCTGCTGCTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGAGGTGTGAAGCTAGATGAGCCTGCTATTGATTTGGCAGTTGCTGTGGCTA
TTGCTTCTAGCTACAAGGAAAAACCAACCAACCCTCAGGAGGCCTTCTTAGGAGAGATTGGCTTGACGGGCGAGATTCGG
CGGGTCACTCGTATTGAGCAGCGGATCAATGAGGCTGCAAAGCTTGGCTTTACCAAGCTTTACGCTCCTAAAAGCTCATT
GCAGGGCATTGACATACCAAGTGGGATTGAGGTTGTTGGTGTAATGACAGTAGGAGAGGTCTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4U0R5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.327

100

0.843
  radA Streptococcus pneumoniae D39

84.327

100

0.843
  radA Streptococcus pneumoniae R6

84.327

100

0.843
  radA Streptococcus pneumoniae TIGR4

84.327

100

0.843
  radA Streptococcus mitis SK321

84.327

100

0.843
  radA Streptococcus mitis NCTC 12261

84.106

100

0.841
  radA Bacillus subtilis subsp. subtilis str. 168

61.148

100

0.611