Detailed information NTG0506525

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: I2436_RS00830
• Genome accession: NZ_CP065060
• Coordinates: 144984..147425 (+)
• Length: 813 a.a.
• NCBI ID: WP_206152877.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ28
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 139984..152425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2436_RS00790 (GDAKBCAL_00158)	ahpF	140313..141845 (-)	1533	WP_206152874.1	alkyl hydroperoxide reductase subunit F	-
I2436_RS00795 (GDAKBCAL_00159)	ahpC	141866..142426 (-)	561	WP_206152875.1	alkyl hydroperoxide reductase subunit C	-
I2436_RS00805 (GDAKBCAL_00161)	-	143052..143393 (+)	342	WP_206152876.1	exotoxin OB-fold domain-containing protein	-
I2436_RS00820 (GDAKBCAL_00163)	-	144148..144351 (+)	204	WP_037583955.1	cold-shock protein	-
I2436_RS00825 (GDAKBCAL_00164)	-	144523..144984 (+)	462	WP_012514800.1	CtsR family transcriptional regulator	-
I2436_RS00830 (GDAKBCAL_00165)	clpC	144984..147425 (+)	2442	WP_206152877.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
I2436_RS09795	-	147769..147914 (-)	146	Protein_126	putative holin-like toxin	-
I2436_RS00840 (GDAKBCAL_00166)	-	148194..148625 (+)	432	WP_014622158.1	hypothetical protein	-
I2436_RS00845 (GDAKBCAL_00167)	-	148627..149916 (+)	1290	WP_206152878.1	hypothetical protein	-
I2436_RS00850 (GDAKBCAL_00168)	-	149898..150290 (+)	393	WP_206152879.1	hypothetical protein	-
I2436_RS00855 (GDAKBCAL_00169)	-	150271..150561 (+)	291	WP_012514805.1	hypothetical protein	-
I2436_RS00860 (GDAKBCAL_00170)	groES	150861..151148 (+)	288	WP_012514806.1	co-chaperone GroES	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90348.14 Da
• Isoelectric Point: 6.3983

>NTDB_id=506525 I2436_RS00830 WP_206152877.1 144984..147425(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MMTYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVDDAYQILLGLRASYEQYHNVTISDK
AVHTAVKLAQRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMVKVSAILAKEDKQPKLKPTAVTE
DDMLHTLSKLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSHGKLAFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=506525 I2436_RS00830 WP_206152877.1 144984..147425(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
GTGATGACTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAGGCAGAGCGCTTTGATAGTCCCTACCT
TGAGACCTGGCACATTTTATTAGCTATGGTAGCCGTTGATCATTCTTTAGCAGCCATGGTTTTAAGCGAATTTGAACGAA
AGATCAGAGCTGAAGAGTATGAGGCAGCTGCCATTTTAGCTATGGGAAAAAGTCCCAAGGAGGTGACTTCTGTCCAATTC
AAGCCGCAATCCAAGGCCTTATCAGAAATACTAGCATTTGCGCATGCTATCTGTCAGGTTACCAATGAGCATGAGGTTGG
CTCAGAGCATGTGCTTTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAATTGGCAGGCTATAGGC
TTAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTGCGTAAGGCAATTGAGCTAAATGCCGGCTATAGTAAGGAA
ACCATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCTATTCCGTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACACTTGATGCCGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCACATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTCGATGATGCTTATCAGATTTTGCTTGGCTTGAGGGCCTCCTATGAACAGTACCATAATGTAACCATCTCTGATAAA
GCTGTTCATACTGCTGTGAAGCTGGCCCAGCGCTACCTGACGAGTAAGCAGCTTCCAGATTCAGCGATTGATCTGCTTGA
TGAAGCTAGTGCGATGGTACAAAGCATGGTTAAAAAGACGCAGCCTGACTTTATAACGCCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGGTCAAGGTATCCGCTATTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTTACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTATTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
GAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACCGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAGCAATGGAAA
AGCGTATTTTAGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAAAAGGTGGTCTTCCACAGC
CTAACACAGGAAAACATGCGTGATGTGGTCAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGGGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACATGGGAAGTTAGCTTTTGATATTGCTTGA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (374-453)

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-131)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-51)

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.539	100	0.745
clpC	Streptococcus thermophilus LMD-9	72.304	100	0.726
clpC	Streptococcus thermophilus LMG 18311	72.059	100	0.723
clpC	Streptococcus pneumoniae Rx1	65.725	100	0.658
clpC	Streptococcus pneumoniae D39	65.725	100	0.658
clpC	Streptococcus pneumoniae TIGR4	65.602	100	0.657
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.865	100	0.503
clpC	Bacillus subtilis subsp. subtilis str. 168	44.072	100	0.453