Detailed information NTG0506528

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: I2436_RS01520
• Genome accession: NZ_CP065060
• Coordinates: 296830..297765 (+)
• Length: 311 a.a.
• NCBI ID: WP_043025153.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ28
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 291830..302765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I2436_RS01500 (GDAKBCAL_00295)	-	291992..293650 (+)	1659	WP_206152170.1	peptide ABC transporter substrate-binding protein	-
I2436_RS01505 (GDAKBCAL_00296)	-	293817..294731 (+)	915	WP_043052710.1	ABC transporter permease	-
I2436_RS01510 (GDAKBCAL_00297)	-	294741..295772 (+)	1032	WP_012678545.1	ABC transporter permease	-
I2436_RS01515 (GDAKBCAL_00298)	oppD	295784..296830 (+)	1047	WP_206152909.1	ABC transporter ATP-binding protein	Regulator
I2436_RS01520 (GDAKBCAL_00299)	amiF	296830..297765 (+)	936	WP_043025153.1	ATP-binding cassette domain-containing protein	Regulator
I2436_RS01525 (GDAKBCAL_00300)	rnjA	298386..300068 (-)	1683	WP_206152910.1	ribonuclease J1	-
I2436_RS01530 (GDAKBCAL_00301)	-	300070..300300 (-)	231	WP_012514942.1	DNA-dependent RNA polymerase subunit epsilon	-
I2436_RS01535 (GDAKBCAL_00302)	tsaB	300586..301284 (+)	699	WP_012514943.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
I2436_RS01540 (GDAKBCAL_00303)	rimI	301287..301712 (+)	426	WP_043030444.1	ribosomal protein S18-alanine N-acetyltransferase	-
I2436_RS01545 (GDAKBCAL_00304)	tsaD	301702..302718 (+)	1017	WP_111721635.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 34974.10 Da
• Isoelectric Point: 7.6417

>NTDB_id=506528 I2436_RS01520 WP_043025153.1 296830..297765(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERKRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAEQYRAECGL

Nucleotide

• Length: 936 bp

>NTDB_id=506528 I2436_RS01520 WP_043025153.1 296830..297765(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAGGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGTGAGATTATTTTTAATGGAGAAAATGTCTCCCAATTA
AAGGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTCAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCCGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAAAAGCGTGGCTTGACCTATCTCTTTATCGCTCACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGGACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAA
GCGTATTGCAGAGGTTTATGATCCTAGCCAGGAGCTAGATGGCCAAGAGCGACAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACTCAGGCCGAAGCCGAGCAGTACCGAGCAGAGTGTGGCCTTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.754	98.071	0.537
amiF	Streptococcus thermophilus LMG 18311	54.426	98.071	0.534
amiF	Streptococcus salivarius strain HSISS4	54.098	98.071	0.531