Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I2435_RS08445 Genome accession   NZ_CP065059
Coordinates   1747941..1748429 (-) Length   162 a.a.
NCBI ID   WP_206156421.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1742941..1753429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2435_RS08430 (JFMEOBDD_01698) - 1745426..1746370 (+) 945 WP_043040085.1 magnesium transporter CorA family protein -
  I2435_RS08435 (JFMEOBDD_01699) - 1746625..1747275 (+) 651 WP_206156420.1 DUF1129 domain-containing protein -
  I2435_RS08440 (JFMEOBDD_01700) rpsR 1747542..1747781 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  I2435_RS08445 (JFMEOBDD_01701) ssb 1747941..1748429 (-) 489 WP_206156421.1 single-stranded DNA-binding protein Machinery gene
  I2435_RS08450 (JFMEOBDD_01702) rpsF 1748448..1748738 (-) 291 WP_012514997.1 30S ribosomal protein S6 -
  I2435_RS08455 (JFMEOBDD_01703) - 1749800..1749998 (-) 199 Protein_1625 HicB family protein -
  I2435_RS08460 (JFMEOBDD_01704) mutY 1750114..1751262 (+) 1149 WP_206156422.1 A/G-specific adenine glycosylase -
  I2435_RS08465 (JFMEOBDD_01706) - 1752062..1752346 (+) 285 WP_206156423.1 hypothetical protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17813.60 Da        Isoelectric Point: 4.7187

>NTDB_id=506506 I2435_RS08445 WP_206156421.1 1747941..1748429(-) (ssb) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSSAANSYSAPTQQTPNFGRDESPFGDSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=506506 I2435_RS08445 WP_206156421.1 1747941..1748429(-) (ssb) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTTAATGGCTCATCGGCAGCCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGACTCAAACCCAATGGATATTTCAGATGACGATCTT
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.63

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.136

0.377