Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KSP27_RS10725 Genome accession   NZ_CP077603
Coordinates   2153789..2154373 (-) Length   194 a.a.
NCBI ID   WP_002223336.1    Uniprot ID   Q9K1A2
Organism   Neisseria meningitidis strain S4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2148789..2159373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSP27_RS10695 - 2149066..2149365 (+) 300 WP_002215645.1 DUF2818 family protein -
  KSP27_RS10700 - 2149474..2150370 (-) 897 WP_002224264.1 polyprenyl synthetase family protein -
  KSP27_RS10705 - 2150354..2150617 (-) 264 WP_002224266.1 exodeoxyribonuclease VII small subunit -
  KSP27_RS11235 - 2150726..2150815 (-) 90 Protein_2091 exodeoxyribonuclease VII small subunit -
  KSP27_RS10710 rsgA 2150842..2151765 (-) 924 WP_002224268.1 ribosome small subunit-dependent GTPase A -
  KSP27_RS10715 - 2151770..2153626 (-) 1857 WP_002224270.1 ABC transporter ATP-binding protein -
  KSP27_RS10720 - 2153652..2153789 (-) 138 WP_002231623.1 hypothetical protein -
  KSP27_RS10725 ruvA 2153789..2154373 (-) 585 WP_002223336.1 Holliday junction branch migration protein RuvA Machinery gene
  KSP27_RS10730 - 2154455..2154781 (-) 327 WP_002224271.1 PepSY domain-containing protein -
  KSP27_RS10735 - 2154843..2155562 (-) 720 WP_002224272.1 septal ring lytic transglycosylase RlpA family protein -
  KSP27_RS10740 - 2155559..2155681 (-) 123 WP_009346050.1 hypothetical protein -
  KSP27_RS10745 trmL 2155692..2156156 (-) 465 WP_002215661.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  KSP27_RS10750 - 2156221..2156946 (-) 726 WP_002221594.1 ComF family protein -
  KSP27_RS10755 bioH 2156945..2157688 (+) 744 WP_002221593.1 pimeloyl-ACP methyl ester esterase BioH -
  KSP27_RS10760 - 2157690..2158478 (+) 789 WP_002221592.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20687.90 Da        Isoelectric Point: 5.3813

>NTDB_id=506440 KSP27_RS10725 WP_002223336.1 2153789..2154373(-) (ruvA) [Neisseria meningitidis strain S4]
MISRLTGKLVEKNPPQIVIDVNGVGYEADVSMQTFYNLPPVGESVQLFTQLIIREDAHLLFGFATAEERKTFRQLIKVGG
IGAKTALGILSAMTADELARAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVAHTVTDGLFAAAPAADETEDIVSTLLA
LGYSEREAKAAVKGVPEGTDVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=506440 KSP27_RS10725 WP_002223336.1 2153789..2154373(-) (ruvA) [Neisseria meningitidis strain S4]
ATGATCAGCAGACTGACCGGCAAACTGGTTGAAAAAAACCCTCCGCAAATCGTCATCGATGTCAACGGTGTCGGCTATGA
GGCCGACGTATCGATGCAGACCTTCTACAACCTGCCGCCCGTGGGTGAAAGCGTACAACTGTTTACCCAGCTTATCATTC
GGGAAGACGCACATCTTTTATTTGGTTTTGCCACTGCGGAAGAACGCAAGACCTTCCGCCAACTGATTAAGGTCGGCGGC
ATCGGCGCGAAAACGGCTTTGGGCATTTTGTCAGCGATGACGGCAGACGAGCTGGCGCGGGCGGTTGCCGAAGAAGATGT
CAAACGCCTGTCTTCCGCGCCGGGAATCGGCAAAAAAACCGCCGAACGTATGGTCTTGGAACTGCGCGGCAAGCTGGTCG
CGCATACGGTAACGGACGGGCTGTTTGCCGCCGCACCCGCCGCCGACGAAACGGAAGACATCGTCAGCACGCTGCTTGCG
CTGGGTTACAGCGAACGCGAAGCAAAAGCGGCGGTCAAAGGCGTTCCGGAGGGGACGGACGTGGGCGAAGGCGTGCGCCT
TGCTTTGAAAAACCTGCTGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(150-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K1A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

37.5

100

0.387
  ruvA Streptococcus pneumoniae D39

37.5

100

0.387
  ruvA Streptococcus pneumoniae TIGR4

37

100

0.381
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.437

100

0.376