Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   KSP27_RS04140 Genome accession   NZ_CP077603
Coordinates   842174..842791 (+) Length   205 a.a.
NCBI ID   WP_002217147.1    Uniprot ID   -
Organism   Neisseria meningitidis strain S4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 837174..847791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSP27_RS04125 - 838362..839990 (-) 1629 WP_002224512.1 ABC-F family ATPase -
  KSP27_RS04130 - 840140..840514 (+) 375 WP_002220962.1 arsenate reductase -
  KSP27_RS04135 - 840569..842107 (+) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -
  KSP27_RS04140 recR 842174..842791 (+) 618 WP_002217147.1 recombination mediator RecR Machinery gene
  KSP27_RS04145 - 842877..843155 (-) 279 WP_002220967.1 hypothetical protein -
  KSP27_RS04150 - 843360..844607 (+) 1248 WP_002220969.1 lipoprotein-releasing ABC transporter permease subunit -
  KSP27_RS04155 lolD 844600..845295 (+) 696 WP_002220970.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KSP27_RS04160 recD 845363..847108 (+) 1746 WP_002220971.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22358.74 Da        Isoelectric Point: 6.2234

>NTDB_id=506403 KSP27_RS04140 WP_002217147.1 842174..842791(+) (recR) [Neisseria meningitidis strain S4]
MSHKKQDAFQGLIDALKVLPNVGPKSAQRIAYHLLQHKRKEAEKLVDALQTALKQVYHCAMCNTFCEGGLCDICADETRD
GRRLMVVHMPADVSNMEAANCHDGLYFVLMGQINTALGMDVSAIALDRLAQRLGGGEVEEIIIATAFTAEGNATAYVLSE
FFKNLPYKVSRLSQGIPLGGELEYVDAGTLAQAVYERRLIKEGGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=506403 KSP27_RS04140 WP_002217147.1 842174..842791(+) (recR) [Neisseria meningitidis strain S4]
ATGAGCCACAAAAAACAAGATGCCTTCCAAGGATTGATCGACGCGCTGAAGGTTTTACCCAACGTCGGGCCGAAATCGGC
ACAGCGGATAGCGTATCATTTGCTCCAACACAAGCGCAAAGAGGCTGAAAAACTGGTGGATGCCTTGCAGACGGCATTGA
AGCAGGTTTACCATTGCGCGATGTGCAACACGTTTTGCGAAGGCGGATTGTGCGATATTTGTGCCGATGAAACACGCGAC
GGGCGGCGGCTGATGGTGGTGCATATGCCTGCCGACGTGTCGAATATGGAAGCGGCAAACTGCCACGACGGGCTGTATTT
CGTCCTGATGGGGCAAATCAATACGGCATTGGGAATGGACGTATCCGCCATCGCATTGGACAGGCTGGCGCAACGGCTGG
GCGGCGGGGAAGTCGAAGAAATCATTATTGCAACCGCTTTTACCGCAGAAGGCAATGCGACGGCGTATGTCCTGTCCGAG
TTTTTTAAAAACCTGCCTTACAAAGTCAGCAGGCTGTCGCAGGGCATTCCCTTGGGCGGCGAATTGGAATATGTCGATGC
GGGAACGCTGGCGCAGGCGGTGTACGAACGCCGCCTGATTAAAGAAGGCGGGGCATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

97.073

0.366