Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IVB58_RS16655 Genome accession   NZ_CP065051
Coordinates   3519198..3519725 (-) Length   175 a.a.
NCBI ID   WP_000695069.1    Uniprot ID   A0A009IQZ1
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3514198..3524725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS16635 (IVB58_16585) - 3514387..3515262 (-) 876 WP_000218799.1 hypothetical protein -
  IVB58_RS16640 (IVB58_16590) aroB 3515278..3516360 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  IVB58_RS16645 (IVB58_16595) aroK 3516389..3516958 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IVB58_RS16650 (IVB58_16600) pilQ 3516970..3519135 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  IVB58_RS16655 (IVB58_16605) pilP 3519198..3519725 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  IVB58_RS16660 (IVB58_16610) pilO 3519736..3520476 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IVB58_RS16665 (IVB58_16615) pilN 3520473..3521114 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  IVB58_RS16670 (IVB58_16620) pilM 3521114..3522172 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19449.66 Da        Isoelectric Point: 8.9898

>NTDB_id=506244 IVB58_RS16655 WP_000695069.1 3519198..3519725(-) (pilP) [Acinetobacter baumannii strain 2016GDAB1]
MKIKQITLYVLACTVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=506244 IVB58_RS16655 WP_000695069.1 3519198..3519725(-) (pilP) [Acinetobacter baumannii strain 2016GDAB1]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTACTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IQZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714