Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IVB58_RS16665 Genome accession   NZ_CP065051
Coordinates   3520473..3521114 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3515473..3526114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS16645 (IVB58_16595) aroK 3516389..3516958 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IVB58_RS16650 (IVB58_16600) pilQ 3516970..3519135 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  IVB58_RS16655 (IVB58_16605) pilP 3519198..3519725 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  IVB58_RS16660 (IVB58_16610) pilO 3519736..3520476 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  IVB58_RS16665 (IVB58_16615) pilN 3520473..3521114 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  IVB58_RS16670 (IVB58_16620) pilM 3521114..3522172 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  IVB58_RS16675 (IVB58_16625) ponA 3522334..3524889 (+) 2556 WP_046023732.1 penicillin-binding protein PBP1a -
  IVB58_RS16680 (IVB58_16630) - 3524907..3525731 (-) 825 WP_094081296.1 putative RNA methyltransferase -
  IVB58_RS16685 (IVB58_16635) - 3525734..3526066 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=506246 IVB58_RS16665 WP_000201227.1 3520473..3521114(-) (pilN) [Acinetobacter baumannii strain 2016GDAB1]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=506246 IVB58_RS16665 WP_000201227.1 3520473..3521114(-) (pilN) [Acinetobacter baumannii strain 2016GDAB1]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709