Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MY9_RS08850 Genome accession   NC_017743
Coordinates   1729209..1730102 (+) Length   297 a.a.
NCBI ID   WP_014663958.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1724209..1735102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS08830 (MY9_1753) - 1724880..1726607 (+) 1728 WP_014663955.1 hypothetical protein -
  MY9_RS08835 (MY9_1754) - 1726604..1726885 (+) 282 WP_014663956.1 FlhB-like flagellar biosynthesis protein -
  MY9_RS08840 (MY9_1755) sucC 1727060..1728217 (+) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  MY9_RS08845 (MY9_1756) sucD 1728246..1729148 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  MY9_RS08850 (MY9_1757) dprA 1729209..1730102 (+) 894 WP_014663958.1 DNA-processing protein DprA Machinery gene
  MY9_RS08855 (MY9_1758) topA 1730290..1732365 (+) 2076 WP_014663959.1 type I DNA topoisomerase -
  MY9_RS08860 (MY9_1759) trmFO 1732441..1733748 (+) 1308 WP_014663960.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MY9_RS08865 (MY9_1760) xerC 1733816..1734730 (+) 915 WP_014663961.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32991.30 Da        Isoelectric Point: 9.9819

>NTDB_id=50603 MY9_RS08850 WP_014663958.1 1729209..1730102(+) (dprA) [Bacillus sp. JS]
MDQAAACLTTCRINQLLSPSLLLKWWKADPSMSLTSSVLQTVTRDKMKAAALKKKIEEFYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKTIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTEELCRKDWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIRSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=50603 MY9_RS08850 WP_014663958.1 1729209..1730102(+) (dprA) [Bacillus sp. JS]
TTGGATCAGGCCGCTGCCTGCTTAACGACTTGCAGAATCAATCAATTATTATCTCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCATCGGTGTTACAAACGGTTACTCGTGATAAAATGAAAGCAGCTGCATTAAAAA
AGAAAATAGAAGAATTTTACCCAAAGCTCCAACGCGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATTCCTATC
TCTTCAAAGCAATATCCTTTCTGGCTTAAAACCATTTATGATCCCCCCGCCGTTCTGTTTGCAAAGGGTGATATGACTCT
TCTTTCGAAAGGAAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTACGGGAAACAAGTTGTCAATCATCTTA
CAGAAGAGCTATGTCGTAAAGATTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCTCGGGAAAACCTTCAATTAGC
AGATCACATGGCTAAACACCATATCCTTCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGACTGAGTGAAGGCGTTATTGTCGTACAGGGCAAGGAAAAAAGCGGTTCGCTGATAACTGCC
TATCAAGCATTGGAGCAAGGTAGAGAAGTGTTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATAAGGTCAGCAGAGGATATTTTCGAGGAGCTTCCCGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

95.286

100

0.953
  dprA Lactococcus lactis subsp. cremoris KW2

39.493

92.929

0.367
  dprA Legionella pneumophila strain ERS1305867

38.214

94.276

0.36

Multiple sequence alignment