Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   I6L85_RS03845 Genome accession   NZ_CP077248
Coordinates   765405..766061 (+) Length   218 a.a.
NCBI ID   WP_008809355.1    Uniprot ID   A8AY37
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 760405..771061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS03820 (I6L85_03820) - 760661..761671 (-) 1011 WP_111723880.1 lactonase family protein -
  I6L85_RS03825 (I6L85_03825) - 761947..762210 (+) 264 WP_008809359.1 hypothetical protein -
  I6L85_RS03830 (I6L85_03830) - 762241..763494 (+) 1254 WP_111723879.1 efflux RND transporter periplasmic adaptor subunit -
  I6L85_RS03835 (I6L85_03835) - 763481..764161 (+) 681 WP_045773235.1 ABC transporter ATP-binding protein -
  I6L85_RS03840 (I6L85_03840) - 764169..765386 (+) 1218 WP_008809356.1 ABC transporter permease -
  I6L85_RS03845 (I6L85_03845) scnR 765405..766061 (+) 657 WP_008809355.1 response regulator transcription factor Regulator
  I6L85_RS03850 (I6L85_03850) - 766058..767419 (+) 1362 WP_111723878.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24915.92 Da        Isoelectric Point: 4.7477

>NTDB_id=505909 I6L85_RS03845 WP_008809355.1 765405..766061(+) (scnR) [Streptococcus gordonii strain FDAARGOS 1455]
MYKILVVEDDTTINQVICEFLKESNYSVTPVYDGAEALRQFEEETFDLVILDMMLPSVSGLDVLKEIRKTSQIPVMILTA
LDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRTAVYSEIVIGDLRVVLEDCTIFWQGEKLALTKKEYEILEVLA
KRKGHLVTRDQLMNTIWGYSELDSRVLDNHIKNIRKKVPGIPLSTITGMGYQLGGDQA

Nucleotide


Download         Length: 657 bp        

>NTDB_id=505909 I6L85_RS03845 WP_008809355.1 765405..766061(+) (scnR) [Streptococcus gordonii strain FDAARGOS 1455]
ATGTATAAGATTTTGGTCGTAGAAGATGATACTACTATCAACCAAGTCATATGTGAATTTTTAAAAGAAAGTAACTACAG
TGTTACGCCGGTTTATGATGGGGCAGAGGCTCTACGTCAGTTTGAAGAAGAGACTTTTGATTTAGTCATTTTAGATATGA
TGTTGCCATCCGTTAGTGGTTTAGATGTTCTCAAGGAAATCCGTAAGACATCGCAGATCCCAGTCATGATTTTAACTGCT
CTAGATGATGAATATACCCAGCTAGTGAGTTTTAATCACTTGATTAGCGATTACGTGACTAAGCCTTTTTCACCCCTCAT
TTTGGTGAAAAGAATAGAAAATATTTTACGTCGGACTGCTGTTTATTCTGAAATTGTCATCGGTGACTTGCGCGTGGTTT
TAGAAGATTGTACGATTTTCTGGCAAGGAGAAAAGCTAGCTCTGACCAAGAAGGAGTATGAAATTCTAGAAGTTCTTGCT
AAACGTAAGGGCCATTTAGTGACAAGAGACCAGCTTATGAATACTATTTGGGGCTATAGTGAGCTAGATAGTCGTGTCTT
GGACAATCATATTAAGAATATTCGCAAGAAAGTTCCTGGAATTCCTTTGTCAACCATTACTGGTATGGGCTATCAATTGG
GTGGAGATCAGGCTTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(143-213)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AY37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.938

100

0.404
  micA Streptococcus pneumoniae Cp1015

37.391

100

0.394
  vicR Streptococcus mutans UA159

36.797

100

0.39