Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   I6L85_RS00400 Genome accession   NZ_CP077248
Coordinates   59940..61589 (-) Length   549 a.a.
NCBI ID   WP_111724243.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 54940..66589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS00385 (I6L85_00385) - 55389..55598 (+) 210 WP_111724246.1 hypothetical protein -
  I6L85_RS00390 (I6L85_00390) comA 56300..58453 (+) 2154 WP_111724245.1 peptide cleavage/export ABC transporter ComA Regulator
  I6L85_RS00395 (I6L85_00395) comB 58463..59821 (+) 1359 WP_111724244.1 competence pheromone export protein ComB Regulator
  I6L85_RS00400 (I6L85_00400) lytF 59940..61589 (-) 1650 WP_111724243.1 GBS Bsp-like repeat-containing protein Regulator
  I6L85_RS00405 (I6L85_00405) purD 61834..63093 (+) 1260 WP_111724242.1 phosphoribosylamine--glycine ligase -
  I6L85_RS00410 (I6L85_00410) - 63153..64346 (+) 1194 WP_111724241.1 ATP-grasp domain-containing protein -
  I6L85_RS00415 (I6L85_00415) purE 64366..64854 (+) 489 WP_045504741.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  I6L85_RS00420 (I6L85_00420) purK 64841..65932 (+) 1092 WP_045504739.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  I6L85_RS00425 (I6L85_00425) - 65934..66197 (+) 264 Protein_58 hypothetical protein -
  I6L85_RS00430 (I6L85_00430) - 66218..66445 (+) 228 WP_082307320.1 phosphoribosylaminoimidazole carboxylase -

Sequence

Protein


Download         Length: 549 a.a.        Molecular weight: 60413.07 Da        Isoelectric Point: 9.2909

>NTDB_id=505859 I6L85_RS00400 WP_111724243.1 59940..61589(-) (lytF) [Streptococcus gordonii strain FDAARGOS 1455]
MKKYKNFLLLSATLLTSLSAPLAAANEQFSPSQLTAMTSEVSVQLEGQTAIVQYQPTTAQEAYPIQHAVWSEEGGQDDIV
WYSADQSTTRIDLSQHKGQGKFLIETYLNVNGVKYHLSSKSVFLNKPVQSAEKTVPEQQNSTSSNNATPQAPAEQKPTNP
APSPAPAPATNRVENPRNSYQKVEDRNKSLPPQKVADPKATPPQAKPNNNKPLQASAARVPAEPVRDSKPLISITNINKE
NGTYTVRVQESPYSKKIKSVQVPIWSTSNQSNLKWYEASQTGNGSFSVQFDIRNHQQLYGNYINHVYITYEDGSRAGYVA
ENVNLPQPAPQPLTPSLQVVHKGQSNYQVILQNSFGDGHILFPIWSDINGQDDLRWYTANSLGNGRYSLDFNANNHIGDG
LYHVHVYRQSGGKVTGVMASNFQVTRPTVAVRKPLNHTTDPSNTYPVGECTWGAKALAPWAGNWWGNGGDWAASARRAGF
RVGSTPQVGAIACWTDGGYGHVGVVTHVDSHKRIQIQESNYAGQRYIANFRGWFDPTIAQGTVSYIYPN

Nucleotide


Download         Length: 1650 bp        

>NTDB_id=505859 I6L85_RS00400 WP_111724243.1 59940..61589(-) (lytF) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAAAAAATACAAAAATTTCTTACTGCTTTCAGCAACCTTGCTGACCTCACTATCCGCTCCCTTAGCTGCAGCGAATGA
ACAGTTTAGCCCATCCCAGCTGACGGCTATGACCAGCGAAGTTTCCGTTCAGCTTGAAGGACAAACAGCGATTGTTCAGT
ATCAACCGACCACTGCGCAAGAAGCTTACCCCATCCAACATGCCGTCTGGTCTGAGGAGGGAGGCCAAGACGATATTGTC
TGGTATTCAGCTGATCAAAGTACGACCAGGATTGACTTGTCTCAGCACAAGGGCCAAGGCAAATTTCTCATCGAGACTTA
TCTCAATGTGAATGGTGTCAAATATCACTTGAGCAGTAAATCGGTCTTTCTAAACAAGCCGGTTCAATCAGCCGAAAAAA
CTGTCCCTGAACAACAAAACAGCACTTCGTCTAACAATGCTACACCTCAAGCGCCTGCTGAGCAAAAGCCAACTAACCCA
GCACCTTCTCCAGCTCCGGCCCCCGCGACCAATAGAGTTGAAAACCCTCGGAACTCCTATCAAAAAGTCGAAGATCGAAA
CAAATCTCTTCCTCCTCAAAAAGTAGCTGACCCAAAGGCGACGCCCCCTCAGGCAAAGCCAAACAATAACAAACCTCTGC
AAGCTTCAGCTGCTAGAGTACCGGCAGAGCCTGTCAGAGACAGCAAGCCACTCATCAGTATTACCAACATTAATAAGGAA
AATGGAACCTATACCGTAAGGGTCCAAGAAAGTCCGTATTCCAAGAAAATTAAAAGTGTGCAGGTGCCTATTTGGAGCAC
CTCTAATCAAAGCAATCTTAAATGGTATGAGGCTTCACAAACAGGCAACGGAAGCTTCTCCGTTCAATTCGATATCCGAA
ATCACCAGCAGCTTTACGGCAACTATATCAATCACGTCTACATTACTTATGAAGACGGTAGCCGAGCTGGCTATGTCGCT
GAAAATGTCAATCTTCCTCAGCCAGCACCCCAACCACTAACTCCGAGTCTGCAAGTGGTTCATAAAGGCCAATCAAATTA
TCAAGTTATCTTACAAAATAGTTTCGGTGACGGCCATATCCTCTTCCCCATCTGGTCAGATATTAATGGTCAAGACGATC
TCCGCTGGTATACAGCCAACTCTCTAGGTAATGGGCGCTATTCGTTAGATTTCAACGCCAATAATCATATCGGTGACGGT
CTCTATCATGTCCATGTCTATCGACAATCTGGTGGGAAAGTAACGGGTGTCATGGCTTCTAATTTTCAAGTGACACGTCC
AACAGTAGCTGTGAGAAAACCTCTTAACCATACGACCGACCCAAGTAACACCTACCCTGTTGGTGAATGTACATGGGGTG
CCAAGGCTCTCGCTCCTTGGGCAGGAAACTGGTGGGGAAATGGTGGGGACTGGGCAGCCAGTGCTCGCCGAGCAGGATTC
CGTGTAGGATCCACACCTCAGGTCGGAGCCATTGCCTGCTGGACTGACGGTGGATACGGACATGTCGGCGTCGTCACGCA
TGTTGATTCACATAAGCGTATCCAAATTCAGGAATCCAACTACGCTGGACAGCGCTATATCGCTAATTTCCGTGGCTGGT
TTGACCCAACCATCGCTCAGGGCACGGTTTCCTATATCTACCCAAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(443-520)

GBS Bsp-like repeat (GBS_Bsp-like)

(344-414)

GBS Bsp-like repeat (GBS_Bsp-like)

(234-319)

GBS Bsp-like repeat (GBS_Bsp-like)

(59-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

97.814

100

0.978
  lytF Streptococcus gordonii str. Challis substr. CH1

96.175

100

0.962