Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   I6L84_RS05180 Genome accession   NZ_CP077224
Coordinates   1047640..1048296 (-) Length   218 a.a.
NCBI ID   WP_008809355.1    Uniprot ID   A8AY37
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042640..1053296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS05175 (I6L84_05175) - 1046282..1047643 (-) 1362 WP_060553363.1 HAMP domain-containing sensor histidine kinase -
  I6L84_RS05180 (I6L84_05180) scnR 1047640..1048296 (-) 657 WP_008809355.1 response regulator transcription factor Regulator
  I6L84_RS05185 (I6L84_05185) - 1048315..1049532 (-) 1218 WP_008809356.1 ABC transporter permease -
  I6L84_RS05190 (I6L84_05190) - 1049540..1050220 (-) 681 WP_008809357.1 ABC transporter ATP-binding protein -
  I6L84_RS05195 (I6L84_05195) - 1050207..1051460 (-) 1254 WP_060553362.1 efflux RND transporter periplasmic adaptor subunit -
  I6L84_RS05200 (I6L84_05200) - 1051491..1051754 (-) 264 WP_008809359.1 hypothetical protein -
  I6L84_RS05205 (I6L84_05205) - 1052030..1053040 (+) 1011 WP_060553361.1 lactonase family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24915.92 Da        Isoelectric Point: 4.7477

>NTDB_id=505791 I6L84_RS05180 WP_008809355.1 1047640..1048296(-) (scnR) [Streptococcus gordonii strain FDAARGOS 1454]
MYKILVVEDDTTINQVICEFLKESNYSVTPVYDGAEALRQFEEETFDLVILDMMLPSVSGLDVLKEIRKTSQIPVMILTA
LDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRTAVYSEIVIGDLRVVLEDCTIFWQGEKLALTKKEYEILEVLA
KRKGHLVTRDQLMNTIWGYSELDSRVLDNHIKNIRKKVPGIPLSTITGMGYQLGGDQA

Nucleotide


Download         Length: 657 bp        

>NTDB_id=505791 I6L84_RS05180 WP_008809355.1 1047640..1048296(-) (scnR) [Streptococcus gordonii strain FDAARGOS 1454]
ATGTATAAGATTTTGGTCGTAGAAGATGATACTACTATCAACCAAGTCATATGTGAATTTTTAAAAGAAAGTAACTACAG
TGTTACGCCGGTTTATGATGGCGCAGAGGCTCTACGTCAGTTTGAAGAAGAGACTTTTGATTTAGTCATTTTAGATATGA
TGTTGCCATCCGTTAGTGGCTTAGATGTACTCAAGGAAATCCGTAAGACATCACAGATTCCAGTCATGATTTTAACTGCT
CTAGATGATGAATATACCCAACTAGTGAGTTTCAACCACCTGATTAGTGATTATGTGACTAAGCCTTTTTCACCTCTCAT
TTTGGTGAAAAGAATAGAAAATATTTTACGTCGGACTGCTGTTTATTCTGAAATTGTCATCGGTGACTTGCGCGTGGTTT
TAGAAGATTGTACGATTTTCTGGCAAGGAGAAAAGCTAGCTCTGACCAAGAAGGAGTATGAAATTCTAGAAGTTCTTGCT
AAACGTAAGGGCCATTTAGTGACAAGAGACCAGCTTATGAATACTATTTGGGGCTATAGTGAGCTAGATAGTCGTGTCTT
GGACAATCATATTAAGAATATTCGCAAGAAAGTTCCTGGAATTCCTTTGTCAACCATTACTGGTATGGGCTATCAATTGG
GTGGGGATCAGGCGTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(143-213)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AY37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.938

100

0.404
  micA Streptococcus pneumoniae Cp1015

37.391

100

0.394
  vicR Streptococcus mutans UA159

36.797

100

0.39