Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPPC18_RS07185 | Genome accession | NC_017742 |
| Coordinates | 1508761..1509336 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203572.1 | Uniprot ID | - |
| Organism | Helicobacter pylori PeCan18 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1503761..1514336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPC18_RS07160 (HPPC18_07205) | uvrD | 1504451..1506496 (+) | 2046 | WP_000345188.1 | DNA helicase UvrD | - |
| HPPC18_RS07165 (HPPC18_07210) | flgA | 1506493..1507149 (+) | 657 | WP_000697678.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPPC18_RS07170 (HPPC18_07215) | - | 1507159..1507722 (+) | 564 | WP_000780094.1 | UbiX family flavin prenyltransferase | - |
| HPPC18_RS07175 (HPPC18_07220) | coaD | 1507722..1508195 (+) | 474 | WP_001169266.1 | pantetheine-phosphate adenylyltransferase | - |
| HPPC18_RS07180 (HPPC18_07225) | tmk | 1508198..1508773 (+) | 576 | WP_000289748.1 | dTMP kinase | - |
| HPPC18_RS07185 (HPPC18_07230) | comFC | 1508761..1509336 (+) | 576 | WP_001203572.1 | ComF family protein | Machinery gene |
| HPPC18_RS07190 (HPPC18_07235) | - | 1509369..1511408 (+) | 2040 | WP_001147677.1 | class I SAM-dependent DNA methyltransferase | - |
| HPPC18_RS08950 (HPPC18_07240) | - | 1511405..1512043 (+) | 639 | WP_000580084.1 | restriction endonuclease subunit S | - |
| HPPC18_RS08955 (HPPC18_07245) | - | 1512079..1512630 (+) | 552 | WP_324185962.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21291.93 Da Isoelectric Point: 9.4455
>NTDB_id=50569 HPPC18_RS07185 WP_001203572.1 1508761..1509336(+) (comFC) [Helicobacter pylori PeCan18]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRATNAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=50569 HPPC18_RS07185 WP_001203572.1 1508761..1509336(+) (comFC) [Helicobacter pylori PeCan18]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCATATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAGGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACTCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCCCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCATATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAGGGCGATAAAAATTTAGATTATTTCTTGCTAGATGACATTATC
ACCACCGGCACCACTCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
96.335 |
100 |
0.963 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |