Detailed information
Bioinformatically predicted
Overview
| Name | comB9 | Type | Machinery gene |
| Locus tag | HPPC18_RS00215 | Genome accession | NC_017742 |
| Coordinates | 38586..39572 (+) | Length | 328 a.a. |
| NCBI ID | WP_014662309.1 | Uniprot ID | - |
| Organism | Helicobacter pylori PeCan18 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 33586..44572
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPC18_RS00185 (HPPC18_00155) | panD | 34992..35345 (+) | 354 | WP_000142218.1 | aspartate 1-decarboxylase | - |
| HPPC18_RS00190 (HPPC18_00160) | - | 35348..35650 (+) | 303 | WP_000347931.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPPC18_RS00195 (HPPC18_00165) | - | 35650..36654 (+) | 1005 | WP_000468463.1 | PDZ domain-containing protein | - |
| HPPC18_RS00200 (HPPC18_00170) | comB6 | 36662..37717 (+) | 1056 | WP_000679730.1 | type IV secretion system protein | Machinery gene |
| HPPC18_RS00205 (HPPC18_00175) | comB7 | 37733..37846 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| HPPC18_RS00210 (HPPC18_00180) | comB8 | 37843..38586 (+) | 744 | WP_000660566.1 | type IV secretion system protein | Machinery gene |
| HPPC18_RS00215 (HPPC18_00185) | comB9 | 38586..39572 (+) | 987 | WP_014662309.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPPC18_RS00220 (HPPC18_00190) | comB10 | 39565..40695 (+) | 1131 | WP_001045746.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPPC18_RS00225 (HPPC18_00195) | - | 40765..42177 (+) | 1413 | WP_000694996.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPPC18_RS00230 (HPPC18_00200) | gmd | 42219..43364 (+) | 1146 | WP_000659867.1 | GDP-mannose 4,6-dehydratase | - |
| HPPC18_RS00235 (HPPC18_00205) | - | 43357..44289 (+) | 933 | WP_001002483.1 | GDP-L-fucose synthase family protein | - |
| HPPC18_RS08610 | - | 44317..44502 (-) | 186 | Protein_40 | hypothetical protein | - |
Sequence
Protein
Download Length: 328 a.a. Molecular weight: 37893.69 Da Isoelectric Point: 9.7396
>NTDB_id=50555 HPPC18_RS00215 WP_014662309.1 38586..39572(+) (comB9) [Helicobacter pylori PeCan18]
MRKVLWGFVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNINYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMTENAPKDAQKNNKPLKEEKEETKTPEEEVIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKRSKGE
MRKVLWGFVGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNINYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMTENAPKDAQKNNKPLKEEKEETKTPEEEVIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKRSKGE
Nucleotide
Download Length: 987 bp
>NTDB_id=50555 HPPC18_RS00215 WP_014662309.1 38586..39572(+) (comB9) [Helicobacter pylori PeCan18]
ATGCGTAAGGTTTTATGGGGTTTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTAATTATTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAATGATCGCATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATAGATAGTGAAGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGACTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAACCCCAGAAGAAGAGGTGATAATTATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATTCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGATTATCTGTGTATCCGT
TTTGTCAAAAGGAGCAAAGGTGAATAA
ATGCGTAAGGTTTTATGGGGTTTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTAATTATTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAATGATCGCATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATAGATAGTGAAGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGACTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAACCCCAGAAGAAGAGGTGATAATTATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATTCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGATTATCTGTGTATCCGT
TTTGTCAAAAGGAGCAAAGGTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB9 | Helicobacter pylori P1 |
90.549 |
100 |
0.905 |