Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   SII_RS08405 Genome accession   NC_022237
Coordinates   1742794..1743120 (-) Length   108 a.a.
NCBI ID   WP_020999196.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1737794..1748120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS08390 (SII_1652) glmS 1738314..1740128 (-) 1815 WP_020999195.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  SII_RS08395 (SII_1653) - 1740504..1741703 (-) 1200 WP_003073996.1 acetate kinase -
  SII_RS08400 (SII_1654) comGH 1741750..1742703 (-) 954 WP_003073994.1 class I SAM-dependent methyltransferase Machinery gene
  SII_RS08405 (SII_1655) comGG/cglG 1742794..1743120 (-) 327 WP_020999196.1 competence type IV pilus minor pilin ComGG Machinery gene
  SII_RS08410 (SII_1656) comGF/cglF 1743101..1743538 (-) 438 WP_003073990.1 competence type IV pilus minor pilin ComGF Machinery gene
  SII_RS08415 comGE/cglE 1743522..1743815 (-) 294 WP_041823288.1 competence type IV pilus minor pilin ComGE Machinery gene
  SII_RS10330 (SII_1657) comGD 1743796..1744215 (-) 420 Protein_1655 competence type IV pilus minor pilin ComGD -
  SII_RS08420 (SII_1658) comGC 1744175..1744492 (-) 318 WP_003075998.1 competence type IV pilus major pilin ComGC Machinery gene
  SII_RS08425 (SII_1659) comGB 1744489..1745511 (-) 1023 WP_020999198.1 competence type IV pilus assembly protein ComGB Machinery gene
  SII_RS08430 (SII_1660) comGA 1745453..1746394 (-) 942 WP_020999199.1 competence type IV pilus ATPase ComGA Machinery gene
  SII_RS08435 (SII_1661) - 1746463..1746828 (-) 366 WP_003075933.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12900.83 Da        Isoelectric Point: 10.6199

>NTDB_id=50555 SII_RS08405 WP_020999196.1 1742794..1743120(-) (comGG/cglG) [Streptococcus intermedius C270]
MWKQKVKAGIMLHALFMTAVFSLLLQFYLHRQTASHRNFTLNRERLQAYAMAVIANEDSRHREFDKGHVQEQQGEKELTL
TVTMKTGRHYQFRFPFEKTKLTNDNRDK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=50555 SII_RS08405 WP_020999196.1 1742794..1743120(-) (comGG/cglG) [Streptococcus intermedius C270]
GTGTGGAAACAAAAAGTTAAAGCAGGTATTATGCTCCATGCCCTTTTTATGACAGCTGTCTTTAGCTTGCTTTTGCAATT
TTATCTTCATCGTCAGACCGCTAGTCATAGAAATTTTACTCTAAATCGAGAACGACTACAGGCGTATGCAATGGCAGTTA
TCGCAAACGAAGATTCTAGACACAGAGAATTTGATAAAGGACATGTCCAAGAGCAACAAGGTGAGAAAGAGCTCACCCTG
ACAGTAACAATGAAGACGGGTCGCCATTATCAATTTCGTTTTCCGTTTGAGAAGACCAAACTAACCAATGACAATCGAGA
CAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

46.535

93.519

0.435
  comGG/cglG Streptococcus mitis SK321

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae Rx1

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae D39

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae R6

42.574

93.519

0.398
  comGG/cglG Streptococcus pneumoniae TIGR4

42.574

93.519

0.398

Multiple sequence alignment