Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPPC18_RS00210 Genome accession   NC_017742
Coordinates   37843..38586 (+) Length   247 a.a.
NCBI ID   WP_000660566.1    Uniprot ID   -
Organism   Helicobacter pylori PeCan18     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32843..43586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPC18_RS00185 (HPPC18_00155) panD 34992..35345 (+) 354 WP_000142218.1 aspartate 1-decarboxylase -
  HPPC18_RS00190 (HPPC18_00160) - 35348..35650 (+) 303 WP_000347931.1 YbaB/EbfC family nucleoid-associated protein -
  HPPC18_RS00195 (HPPC18_00165) - 35650..36654 (+) 1005 WP_000468463.1 PDZ domain-containing protein -
  HPPC18_RS00200 (HPPC18_00170) comB6 36662..37717 (+) 1056 WP_000679730.1 type IV secretion system protein Machinery gene
  HPPC18_RS00205 (HPPC18_00175) comB7 37733..37846 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  HPPC18_RS00210 (HPPC18_00180) comB8 37843..38586 (+) 744 WP_000660566.1 type IV secretion system protein Machinery gene
  HPPC18_RS00215 (HPPC18_00185) comB9 38586..39572 (+) 987 WP_014662309.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPPC18_RS00220 (HPPC18_00190) comB10 39565..40695 (+) 1131 WP_001045746.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPPC18_RS00225 (HPPC18_00195) - 40765..42177 (+) 1413 WP_000694996.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPPC18_RS00230 (HPPC18_00200) gmd 42219..43364 (+) 1146 WP_000659867.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28733.03 Da        Isoelectric Point: 8.9604

>NTDB_id=50554 HPPC18_RS00210 WP_000660566.1 37843..38586(+) (comB8) [Helicobacter pylori PeCan18]
MKEKPFNSEQLIYLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIVLVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDAPDFDYASMPKNPTGFKITRYSITEI
APINRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=50554 HPPC18_RS00210 WP_000660566.1 37843..38586(+) (comB8) [Helicobacter pylori PeCan18]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAGAG
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGTACTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAGTCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATCAAAGCCCAAAACAGCATTTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCAAGCGT
GTCCATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACGCCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCACCGATTAATAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.142

100

0.951

Multiple sequence alignment