Detailed information NTG0050552

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPPC18_RS00200
• Genome accession: NC_017742
• Coordinates: 36662..37717 (+)
• Length: 351 a.a.
• NCBI ID: WP_000679730.1
• Uniprot ID: -
• Organism: Helicobacter pylori PeCan18
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31662..42717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPC18_RS00170 (HPPC18_00140)	-	32087..32500 (+)	414	WP_001023005.1	universal stress protein	-
HPPC18_RS00175 (HPPC18_00145)	-	32502..32777 (+)	276	WP_000781794.1	ATP-dependent Clp protease adaptor ClpS	-
HPPC18_RS00180 (HPPC18_00150)	-	32777..35002 (+)	2226	WP_000357186.1	AAA family ATPase	-
HPPC18_RS00185 (HPPC18_00155)	panD	34992..35345 (+)	354	WP_000142218.1	aspartate 1-decarboxylase	-
HPPC18_RS00190 (HPPC18_00160)	-	35348..35650 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
HPPC18_RS00195 (HPPC18_00165)	-	35650..36654 (+)	1005	WP_000468463.1	PDZ domain-containing protein	-
HPPC18_RS00200 (HPPC18_00170)	comB6	36662..37717 (+)	1056	WP_000679730.1	type IV secretion system protein	Machinery gene
HPPC18_RS00205 (HPPC18_00175)	comB7	37733..37846 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
HPPC18_RS00210 (HPPC18_00180)	comB8	37843..38586 (+)	744	WP_000660566.1	type IV secretion system protein	Machinery gene
HPPC18_RS00215 (HPPC18_00185)	comB9	38586..39572 (+)	987	WP_014662309.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPPC18_RS00220 (HPPC18_00190)	comB10	39565..40695 (+)	1131	WP_001045746.1	DNA type IV secretion system protein ComB10	Machinery gene
HPPC18_RS00225 (HPPC18_00195)	-	40765..42177 (+)	1413	WP_000694996.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39617.47 Da
• Isoelectric Point: 8.8155

>NTDB_id=50552 HPPC18_RS00200 WP_000679730.1 36662..37717(+) (comB6) [Helicobacter pylori PeCan18]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKNWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQYTTTSPALSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=50552 HPPC18_RS00200 WP_000679730.1 36662..37717(+) (comB6) [Helicobacter pylori PeCan18]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGATTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGTT
TCATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
TAAAAACTGGAGGAGCGTTGTGGTTATATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTATAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTACAATATACCA
CGACCTCGCCCGCTCTTTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	93.162	100	0.932