Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IXK98_RS22900 Genome accession   NZ_CP064858
Coordinates   3077152..3077715 (-) Length   187 a.a.
NCBI ID   WP_171802179.1    Uniprot ID   -
Organism   Vibrio europaeus strain 07/118 T2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3072152..3082715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS22875 (IXK98_22875) aroB 3072565..3073653 (-) 1089 WP_171383619.1 3-dehydroquinate synthase -
  IXK98_RS22880 (IXK98_22880) aroK 3073682..3074200 (-) 519 WP_069667329.1 shikimate kinase AroK -
  IXK98_RS22885 (IXK98_22885) pilQ 3074377..3076053 (-) 1677 WP_171802406.1 type IV pilus secretin PilQ Machinery gene
  IXK98_RS22890 (IXK98_22890) pilP 3076085..3076588 (-) 504 WP_171802177.1 pilus assembly protein PilP Machinery gene
  IXK98_RS22895 (IXK98_22895) pilO 3076578..3077165 (-) 588 WP_171802178.1 type 4a pilus biogenesis protein PilO Machinery gene
  IXK98_RS22900 (IXK98_22900) pilN 3077152..3077715 (-) 564 WP_171802179.1 PilN domain-containing protein Machinery gene
  IXK98_RS22905 (IXK98_22905) pilM 3077705..3078700 (-) 996 WP_069667325.1 type IV pilus assembly protein PilM Machinery gene
  IXK98_RS22910 (IXK98_22910) - 3078841..3081360 (+) 2520 WP_171383617.1 penicillin-binding protein 1A -
  IXK98_RS22915 (IXK98_22915) oxyR 3081423..3082316 (-) 894 WP_171802180.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21537.81 Da        Isoelectric Point: 7.4627

>NTDB_id=505406 IXK98_RS22900 WP_171802179.1 3077152..3077715(-) (pilN) [Vibrio europaeus strain 07/118 T2]
MLHNINLLPWREELRVYRQKRFGVLMMVTLIIAVVIQWGIGSYIEQQQERQSERNNYLVRYDTQLDQQLNQLKIVEQEHQ
ALLTRLSVIEDLQKERNKTTDFMNLLPELIPPGVYIDKLKINGLQVELAGISDSTSHLASMLDNLEKSPAITNVQMHSIV
HGTARFASKYQSYRVSFSLLGGQSVSL

Nucleotide


Download         Length: 564 bp        

>NTDB_id=505406 IXK98_RS22900 WP_171802179.1 3077152..3077715(-) (pilN) [Vibrio europaeus strain 07/118 T2]
ATGCTGCATAACATCAATTTGTTGCCGTGGCGTGAAGAGCTGCGTGTTTATCGCCAAAAGCGCTTTGGAGTGCTGATGAT
GGTTACGTTAATCATTGCTGTGGTTATCCAGTGGGGCATTGGCAGTTATATAGAGCAGCAACAGGAACGGCAATCTGAAC
GTAATAACTATCTTGTGCGTTATGACACACAGTTGGATCAACAGCTTAACCAACTGAAAATCGTCGAACAAGAACATCAA
GCCCTATTGACCCGCTTGTCGGTTATTGAGGATTTGCAGAAAGAGCGCAATAAAACCACAGACTTTATGAATTTATTGCC
TGAGCTGATTCCGCCTGGTGTTTACATCGACAAGTTAAAGATCAATGGCCTACAGGTTGAGCTTGCTGGGATCAGCGATT
CAACTTCTCATCTTGCCTCTATGCTAGATAACCTCGAAAAATCACCCGCTATAACTAACGTCCAGATGCATTCCATTGTT
CATGGTACGGCTCGATTTGCCAGTAAGTACCAATCATATCGCGTCTCTTTTTCTCTTCTAGGAGGTCAGAGTGTATCGCT
TTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

53.889

96.257

0.519
  pilN Vibrio campbellii strain DS40M4

51.064

100

0.513