Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KQY23_RS07890 Genome accession   NZ_CP076823
Coordinates   1662626..1663228 (-) Length   200 a.a.
NCBI ID   WP_209180494.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST59     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1657626..1668228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY23_RS07870 (KQY23_07870) yajC 1659122..1659382 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  KQY23_RS07875 (KQY23_07875) tgt 1659401..1660540 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  KQY23_RS07880 (KQY23_07880) queA 1660563..1661588 (-) 1026 WP_001019166.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KQY23_RS07885 (KQY23_07885) ruvB 1661590..1662594 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KQY23_RS07890 (KQY23_07890) ruvA 1662626..1663228 (-) 603 WP_209180494.1 Holliday junction branch migration protein RuvA Machinery gene
  KQY23_RS07895 (KQY23_07895) - 1663242..1663697 (-) 456 WP_000368900.1 ACT domain-containing protein -
  KQY23_RS07900 (KQY23_07900) obgE 1663710..1665002 (-) 1293 WP_000496105.1 GTPase ObgE -
  KQY23_RS07905 (KQY23_07905) rpmA 1665758..1666042 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  KQY23_RS07910 (KQY23_07910) - 1666054..1666374 (-) 321 WP_000633690.1 ribosomal-processing cysteine protease Prp -
  KQY23_RS07915 (KQY23_07915) rplU 1666380..1666688 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  KQY23_RS07920 (KQY23_07920) mreD 1666924..1667454 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22290.51 Da        Isoelectric Point: 6.0240

>NTDB_id=505322 KQY23_RS07890 WP_209180494.1 1662626..1663228(-) (ruvA) [Staphylococcus aureus strain ST59]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEVVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=505322 KQY23_RS07890 WP_209180494.1 1662626..1663228(-) (ruvA) [Staphylococcus aureus strain ST59]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGTTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425