Detailed information NTG0050529

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPSH112_RS00205
• Genome accession: NC_017741
• Coordinates: 34453..35508 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786694.1
• Uniprot ID: A0AAE7PKX6
• Organism: Helicobacter pylori Shi112
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29453..40508

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH112_RS00175 (HPSH112_00150)	-	29883..30296 (+)	414	WP_001023005.1	universal stress protein	-
HPSH112_RS00180 (HPSH112_00155)	-	30311..30586 (+)	276	WP_000784856.1	ATP-dependent Clp protease adaptor ClpS	-
HPSH112_RS00185 (HPSH112_00160)	-	30586..32808 (+)	2223	WP_001051544.1	AAA family ATPase	-
HPSH112_RS00190 (HPSH112_00165)	panD	32798..33148 (+)	351	WP_000142269.1	aspartate 1-decarboxylase	-
HPSH112_RS00195 (HPSH112_00170)	-	33159..33452 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HPSH112_RS00200 (HPSH112_00175)	-	33452..34447 (+)	996	WP_000468441.1	PDZ domain-containing protein	-
HPSH112_RS00205 (HPSH112_00180)	comB6	34453..35508 (+)	1056	WP_000786694.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSH112_RS00210	comB7	35524..35637 (+)	114	WP_001217864.1	hypothetical protein	Machinery gene
HPSH112_RS00215 (HPSH112_00185)	comB8	35634..36377 (+)	744	WP_000660502.1	type IV secretion system protein	Machinery gene
HPSH112_RS00220 (HPSH112_00190)	comB9	36377..37333 (+)	957	WP_014662053.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSH112_RS00225 (HPSH112_00195)	comB10	37326..38462 (+)	1137	WP_001045868.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSH112_RS00230 (HPSH112_00200)	-	38534..39946 (+)	1413	WP_000694836.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39689.63 Da
• Isoelectric Point: 9.0413

>NTDB_id=50529 HPSH112_RS00205 WP_000786694.1 34453..35508(+) (comB6) [Helicobacter pylori Shi112]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASMSGGVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=50529 HPSH112_RS00205 WP_000786694.1 34453..35508(+) (comB6) [Helicobacter pylori Shi112]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACCAGTGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACATGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTGCTTCTATGAGCGGAGGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972