Detailed information NTG0505101

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: LLDRC3_RS07490
• Genome accession: NZ_CP064835
• Coordinates: 1466257..1467579 (+)
• Length: 440 a.a.
• NCBI ID: WP_058221332.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain DRC3
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1461257..1472579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLDRC3_RS07465 (LLDRC3_1429)	glyQ	1461773..1462726 (-)	954	WP_003130667.1	glycine--tRNA ligase subunit alpha	-
LLDRC3_RS07470 (LLDRC3_1430)	-	1463011..1463757 (-)	747	WP_003130666.1	bifunctional metallophosphatase/5'-nucleotidase	-
LLDRC3_RS07475 (LLDRC3_1431)	-	1463873..1464892 (-)	1020	WP_003130663.1	DUF475 domain-containing protein	-
LLDRC3_RS07480 (LLDRC3_1432)	-	1464940..1465437 (-)	498	WP_003130662.1	VanZ family protein	-
LLDRC3_RS07485 (LLDRC3_1433)	-	1465571..1466200 (-)	630	WP_003130660.1	YigZ family protein	-
LLDRC3_RS07490 (LLDRC3_1434)	comFA	1466257..1467579 (+)	1323	WP_058221332.1	DEAD/DEAH box helicase	Machinery gene
LLDRC3_RS07495 (LLDRC3_02820)	comFC	1467822..1468226 (+)	405	WP_003130657.1	ComF family protein	Machinery gene
LLDRC3_RS07500 (LLDRC3_1436)	-	1468260..1468838 (-)	579	WP_003130655.1	nucleotidyltransferase family protein	-
LLDRC3_RS07505 (LLDRC3_1437)	-	1468852..1469307 (-)	456	WP_003130653.1	diacylglycerol kinase family protein	-
LLDRC3_RS07510 (LLDRC3_1438)	ybeY	1469291..1469779 (-)	489	WP_003130652.1	rRNA maturation RNase YbeY	-
LLDRC3_RS07515 (LLDRC3_1439)	-	1469931..1470410 (-)	480	WP_209599481.1	NUDIX hydrolase	-
LLDRC3_RS07520 (LLDRC3_1440)	-	1470468..1471436 (-)	969	WP_003130649.1	PhoH family protein	-

Sequence

Protein

• Length: 440 a.a.
• Molecular weight: 50201.71 Da
• Isoelectric Point: 10.1065

>NTDB_id=505101 LLDRC3_RS07490 WP_058221332.1 1466257..1467579(+) (comFA) [Lactococcus lactis subsp. lactis strain DRC3]
MSTNQEKLFGRLLLKNDILQLIKNTDKISVSKIFSNFLLETKVNPILGMTSISSNKIKCNRCGTVHIKNSVKLPIGVFYC
PSCIQLGRVRSDEFLYFLPQKNFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTEMIYQVIEQILES
GGVVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDSYFRAPLIIMTSHQLLRFKEAFDLLIIDEVDAFPFRDNEMLYV
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNFPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIEF
GQEFAKQLQLKFPKEKIASVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFHYGKSKAMCQAVREIKKMNQLGGFS

Nucleotide

• Length: 1323 bp

>NTDB_id=505101 LLDRC3_RS07490 WP_058221332.1 1466257..1467579(+) (comFA) [Lactococcus lactis subsp. lactis strain DRC3]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATGATATTTTGCAACTTATAAAAAATACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGTTAGAAACGAAGGTGAATCCAATTTTGGGAATGACTTCAATTTCTT
CCAATAAAATAAAATGCAACCGTTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGGTGTATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGCTCCGATGAATTCTTGTACTTTCTGCCACAAAAGAATTTCCCAAAGAAATC
ATATATAAACTGGTCTGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTTTGTCAGGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGAAATGATTTATCAAGTCATTGAGCAAATTTTAGAAAGC
GGTGGGGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAGCTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GTTTCAAGGAAGCTTTTGATTTGCTGATTATTGATGAAGTTGATGCCTTTCCCTTTAGAGATAATGAAATGCTTTATGTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGAAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTCCCGCGTCGTTTTCACAATTTCCCTTTAGTGGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCTCTTCTTATTTTTGCTGCTGAAATTGAATTT
GGACAAGAATTTGCAAAACAACTACAATTGAAATTTCCTAAAGAAAAAATTGCTTCCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACATCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCTGCACTGATACAAATGGCTGGACGT
GTGGGTCGTAGTCCTGAACGTCCAACAGGCTTAGTTAGTTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGT
TAGAGAAATCAAAAAAATGAACCAACTGGGAGGTTTTTCATGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (114-233)

• Helicase conserved C-terminal domain (Helicase_C) (300-403)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	74.5	90.909	0.677
comFA/cflA	Streptococcus mitis SK321	52.01	90.455	0.47
comFA/cflA	Streptococcus pneumoniae Rx1	52.01	90.455	0.47
comFA/cflA	Streptococcus pneumoniae D39	52.01	90.455	0.47
comFA/cflA	Streptococcus pneumoniae R6	52.01	90.455	0.47
comFA/cflA	Streptococcus pneumoniae TIGR4	52.01	90.455	0.47
comFA/cflA	Streptococcus mitis NCTC 12261	51.256	90.455	0.464
comFA	Bacillus subtilis subsp. subtilis str. 168	38.018	98.636	0.375