Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SII_RS02430 Genome accession   NC_022237
Coordinates   480170..481939 (+) Length   589 a.a.
NCBI ID   WP_020998429.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 475170..486939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS09620 (SII_0476) - 475496..475726 (+) 231 WP_014829739.1 DUF1146 family protein -
  SII_RS02410 (SII_0477) murA 475764..477044 (+) 1281 WP_020998426.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SII_RS02415 - 477037..477213 (+) 177 WP_003072163.1 DNA-directed RNA polymerase subunit beta -
  SII_RS02420 (SII_0478) endA 477276..478121 (+) 846 WP_020998427.1 DNA/RNA non-specific endonuclease Machinery gene
  SII_RS02425 (SII_0479) - 478424..480160 (+) 1737 WP_020998428.1 ABC transporter ATP-binding protein -
  SII_RS02430 (SII_0480) rcrQ 480170..481939 (+) 1770 WP_020998429.1 ABC transporter ATP-binding protein Regulator
  SII_RS02435 (SII_0481) - 482312..483313 (-) 1002 WP_020998430.1 YdcF family protein -
  SII_RS02445 - 484040..484420 (+) 381 WP_041823134.1 CidA/LrgA family protein -
  SII_RS02450 (SII_0483) - 484413..485108 (+) 696 WP_020998431.1 LrgB family protein -
  SII_RS02455 (SII_0484) - 485232..485744 (+) 513 WP_003072179.1 adenine phosphoribosyltransferase -
  SII_RS10215 - 485849..486697 (+) 849 Protein_457 homoserine O-succinyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 66161.33 Da        Isoelectric Point: 5.5213

>NTDB_id=50491 SII_RS02430 WP_020998429.1 480170..481939(+) (rcrQ) [Streptococcus intermedius C270]
MKQHSFMRLWSYLKVYKLSVILAIFLKVVSIVMSVLEPFVLGLAITELTRNVLDIAKGVEGASINTTYVFWVMALYLLRG
LFYEIGAYYSNYFMTNAVQNTVRDMRNELSSKINQIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVLTITL
VIGMVLYLNFQLALIVIASIPLTYFGATFILKKSQPYFKKQADTLGVMNGFVQENLTGFNVLKLYGREETSSDDFREITQ
NLQEVGFKASFISGLMMPILNAISDLTYLLVAVVGGLQVISGQLTIGNMQAFVQYVWQVNQPIQNLTQLAGQLQSAKSSL
DRIFQVLDEPDEVTDIKEQLEHDLTGQVSFQHVDFQYVESKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYDV
TAGSISVDGHDIRNLSRQDYRKQFGMVLQDAWLYEGTVKDNLRFGNLSATDEEIVDAAKAANVDHFIRTLPGGYNMEMNQ
ESSNISLGQKQLLTIARALLANPKILILDEATSSVDTRLELLIQKAMKNLMQGRTSFVIAHRLSTIQEADKILVLKDGQI
IEQGTHESLLADRGFYYDLYTSQFAKKEA

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=50491 SII_RS02430 WP_020998429.1 480170..481939(+) (rcrQ) [Streptococcus intermedius C270]
ATGAAACAACATAGTTTTATGCGCTTGTGGAGTTACTTAAAAGTTTATAAACTCTCAGTAATCCTTGCTATCTTTTTGAA
GGTGGTGAGTATTGTGATGAGCGTGCTAGAGCCTTTTGTACTTGGTCTTGCTATTACAGAATTGACACGAAATGTGCTGG
ACATAGCAAAAGGAGTCGAAGGCGCCAGTATAAACACAACATATGTTTTTTGGGTAATGGCACTTTACCTTTTGCGTGGT
TTGTTCTATGAAATTGGGGCTTACTATTCTAATTATTTTATGACCAATGCAGTGCAAAATACAGTACGGGACATGCGCAA
TGAGTTGAGTTCTAAAATTAATCAAATTCCAGTTTCTTACTTTGATAAGCATCAATTTGGAGATTTACTAGGGCGCTTTA
CCAGTGATGTAGAGACTGTTTCAAATGCGCTTCAACAATCATTCTTACAAGTTGTAAATGCGGTTTTGACCATTACCTTA
GTTATCGGAATGGTCTTGTATCTTAATTTTCAACTGGCTTTGATAGTGATTGCTAGCATTCCATTGACCTATTTTGGGGC
GACCTTTATTTTGAAAAAATCACAACCGTATTTTAAAAAGCAAGCAGATACGCTAGGTGTCATGAATGGATTTGTTCAAG
AAAATCTAACTGGTTTTAATGTGCTGAAACTCTATGGTCGTGAAGAAACATCTTCAGACGATTTTCGAGAAATCACGCAA
AACCTCCAAGAAGTCGGGTTCAAAGCTAGTTTTATTTCTGGCTTGATGATGCCAATTTTGAATGCAATTTCAGATTTGAC
TTATCTGCTTGTAGCAGTTGTTGGTGGTTTGCAAGTCATTTCTGGACAATTAACAATTGGGAACATGCAAGCTTTTGTAC
AATATGTTTGGCAAGTAAACCAACCAATTCAAAATTTAACGCAGTTAGCTGGGCAATTACAAAGTGCTAAGTCTTCGCTG
GATCGTATTTTCCAAGTCTTAGATGAACCAGACGAAGTAACGGATATAAAAGAGCAATTAGAGCATGATTTGACAGGACA
GGTTAGTTTTCAACATGTTGATTTTCAATATGTGGAAAGCAAACCGCTCATTCGCAACTTCAATTTGGAGGTAAAGCCGG
GTGAAATGGTAGCAATTGTCGGTCCGACCGGTGCTGGAAAGACCACCCTCATCAATCTACTCATGCGCTTTTACGATGTA
ACAGCAGGTTCAATTTCTGTTGATGGTCACGATATTCGCAACTTATCGCGCCAAGATTACCGCAAGCAATTTGGCATGGT
CTTGCAAGACGCTTGGCTCTATGAAGGAACAGTCAAGGATAATTTGCGTTTTGGAAATCTGAGTGCAACAGATGAAGAAA
TTGTGGACGCTGCCAAAGCTGCTAATGTAGATCATTTCATTCGGACACTCCCAGGTGGCTATAATATGGAAATGAATCAG
GAATCTAGCAATATCTCGCTGGGGCAAAAACAATTATTGACCATTGCGCGAGCACTATTGGCAAATCCCAAAATCTTAAT
TTTGGATGAAGCAACCTCGTCAGTTGATACGCGCTTAGAGCTCTTGATTCAAAAAGCGATGAAGAACCTCATGCAAGGAC
GGACAAGCTTTGTCATTGCTCACCGCTTATCGACAATTCAAGAAGCTGATAAAATTTTAGTCCTTAAAGACGGACAAATT
ATTGAACAAGGAACTCATGAATCACTTCTAGCTGATAGAGGCTTCTATTATGATTTATATACAAGCCAATTTGCTAAGAA
AGAAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-302)

ABC transporter (ABC_tran)

(365-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.939

100

0.443

Multiple sequence alignment