Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPSH417_RS01635 Genome accession   NC_017739
Coordinates   333432..333836 (+) Length   134 a.a.
NCBI ID   WP_000599174.1    Uniprot ID   -
Organism   Helicobacter pylori Shi417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328432..338836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH417_RS01600 (HPSH417_01645) - 328612..329550 (-) 939 WP_000833956.1 tetraacyldisaccharide 4'-kinase -
  HPSH417_RS01605 (HPSH417_01650) - 329547..330329 (-) 783 WP_001168222.1 NAD+ synthase -
  HPSH417_RS01615 (HPSH417_01655) ilvC 330576..331568 (+) 993 WP_001207783.1 ketol-acid reductoisomerase -
  HPSH417_RS01620 (HPSH417_01660) minD 331587..332393 (+) 807 WP_001019101.1 septum site-determining protein MinD -
  HPSH417_RS01625 (HPSH417_01665) minE 332390..332623 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HPSH417_RS01630 (HPSH417_01670) dprA 332635..333435 (+) 801 WP_000840088.1 DNA-processing protein DprA Machinery gene
  HPSH417_RS01635 (HPSH417_01675) dprB 333432..333836 (+) 405 WP_000599174.1 Holliday junction resolvase RuvX Machinery gene
  HPSH417_RS01640 (HPSH417_01685) - 334008..334439 (+) 432 WP_000954139.1 tetratricopeptide repeat protein -
  HPSH417_RS01645 (HPSH417_01690) - 334627..334965 (+) 339 WP_000699918.1 hypothetical protein -
  HPSH417_RS01650 (HPSH417_01695) - 334949..335515 (+) 567 WP_000037149.1 hypothetical protein -
  HPSH417_RS08505 (HPSH417_01700) - 335527..335745 (+) 219 WP_014661925.1 glycoside hydrolase family protein -
  HPSH417_RS01665 (HPSH417_01710) - 336059..336439 (+) 381 Protein_321 DUF1294 domain-containing protein -
  HPSH417_RS01670 (HPSH417_01715) - 336439..337224 (+) 786 WP_000488068.1 hypothetical protein -
  HPSH417_RS01675 (HPSH417_01720) - 337214..338302 (+) 1089 WP_000426582.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15081.60 Da        Isoelectric Point: 8.8322

>NTDB_id=50492 HPSH417_RS01635 WP_000599174.1 333432..333836(+) (dprB) [Helicobacter pylori Shi417]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=50492 HPSH417_RS01635 WP_000599174.1 333432..333836(+) (dprB) [Helicobacter pylori Shi417]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCTTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment