Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   KQ254_RS04425 Genome accession   NZ_CP076807
Coordinates   935662..936138 (+) Length   158 a.a.
NCBI ID   WP_004745410.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930662..941138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS04415 (KQ254_04395) - 931173..931955 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  KQ254_RS04420 (KQ254_04400) - 931971..935648 (+) 3678 WP_212294747.1 PilC/PilY family type IV pilus protein -
  KQ254_RS04425 (KQ254_04405) pilY2 935662..936138 (+) 477 WP_004745410.1 type IV pilin protein Machinery gene
  KQ254_RS04430 (KQ254_04410) pilE 936132..936596 (+) 465 WP_004745412.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KQ254_RS04435 (KQ254_04415) rpsP 936744..936995 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  KQ254_RS04440 (KQ254_04420) rimM 937015..937563 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  KQ254_RS04445 (KQ254_04425) trmD 937609..938349 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KQ254_RS04450 (KQ254_04430) rplS 938557..938925 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  KQ254_RS04455 (KQ254_04435) - 938978..939919 (-) 942 WP_212294758.1 triacylglycerol lipase -
  KQ254_RS04460 (KQ254_04440) - 940034..941068 (-) 1035 WP_002062194.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17383.85 Da        Isoelectric Point: 9.7307

>NTDB_id=504907 KQ254_RS04425 WP_004745410.1 935662..936138(+) (pilY2) [Acinetobacter baumannii strain UC20804]
MKRKFTYSLGFTLIEVMVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAASVIL
PVGATGDAVKYQITIRDGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGTGAERW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=504907 KQ254_RS04425 WP_004745410.1 935662..936138(+) (pilY2) [Acinetobacter baumannii strain UC20804]
ATGAAACGTAAATTCACATATTCTTTGGGCTTCACTCTTATTGAGGTAATGGTTGTGGTGGTGATTGTTGCTATTTTTGC
GGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGCTTCGCGCGCAGAACAGGAAATCCAGAAAATTT
CCATACAGCTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTTTTTCTACAGGTGCTGCTGCGTCAGTAATTTTG
CCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGAGATGGTGATGATACTTCGAAACCTTTAACAGA
TCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGATCCTTATAATTTTACTTATTTATTTAGTAGTA
ATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAACTTGTGGCACTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

46.875

100

0.475
  comE Acinetobacter baylyi ADP1

43.03

100

0.449