Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   KQ254_RS04400 Genome accession   NZ_CP076807
Coordinates   929191..929640 (+) Length   149 a.a.
NCBI ID   WP_004745398.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC20804     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 924191..934640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ254_RS04370 (KQ254_04350) - 924654..926759 (-) 2106 WP_001117590.1 HD domain-containing protein -
  KQ254_RS04375 (KQ254_04355) - 926799..926929 (-) 131 Protein_837 hypothetical protein -
  KQ254_RS04380 (KQ254_04360) rpoZ 926968..927246 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ254_RS04385 (KQ254_04365) gmk 927319..927948 (-) 630 WP_000015937.1 guanylate kinase -
  KQ254_RS04390 (KQ254_04370) ispH 928071..929021 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ254_RS04395 (KQ254_04375) - 929034..929282 (-) 249 Protein_841 hypothetical protein -
  KQ254_RS04400 (KQ254_04380) fimU 929191..929640 (+) 450 WP_004745398.1 GspH/FimT family pseudopilin Machinery gene
  KQ254_RS04405 (KQ254_04385) pilV 929637..930137 (+) 501 WP_106439670.1 type IV pilus modification protein PilV Machinery gene
  KQ254_RS04410 (KQ254_04390) pilW 930139..931176 (+) 1038 WP_106439669.1 PilW family protein Machinery gene
  KQ254_RS04415 (KQ254_04395) - 931173..931955 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16102.74 Da        Isoelectric Point: 9.2303

>NTDB_id=504904 KQ254_RS04400 WP_004745398.1 929191..929640(+) (fimU) [Acinetobacter baumannii strain UC20804]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPMFGDLLINQNLNRSTEELVSSINQARMKAVVERRQVKVQLNSTYIADTN
NQINWMPSGKAQLKTGSDTSIIFLMSGLVKDATGDTTFEICNKTGGNKSKIISVSRMGAIQSTTVGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=504904 KQ254_RS04400 WP_004745398.1 929191..929640(+) (fimU) [Acinetobacter baumannii strain UC20804]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCAATGTTTGGGGATCTGTTAATTAATCAAAATTTGAATAGAAGTACAGAGGAGCTGGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTGTGGTAGAACGTAGACAAGTAAAAGTGCAATTAAATTCTACTTATATTGCAGATACTAAT
AATCAAATTAATTGGATGCCAAGCGGAAAAGCTCAATTAAAGACGGGATCTGATACCTCTATAATATTTCTGATGTCCGG
TTTAGTAAAAGACGCAACCGGAGATACTACATTTGAAATTTGTAATAAGACTGGTGGTAATAAATCAAAAATTATTAGTG
TTTCAAGAATGGGAGCAATTCAATCGACTACGGTGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

41.509

100

0.443