Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ITP52_RS12425 Genome accession   NZ_CP064818
Coordinates   2480532..2481677 (-) Length   381 a.a.
NCBI ID   WP_015250985.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2475532..2486677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS12390 (ITP52_12390) - 2476089..2476649 (-) 561 WP_015714897.1 hypothetical protein -
  ITP52_RS12395 (ITP52_12395) - 2476642..2477289 (-) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  ITP52_RS12400 (ITP52_12400) - 2477292..2478089 (-) 798 WP_231573542.1 hypothetical protein -
  ITP52_RS12405 (ITP52_12405) - 2478099..2478773 (-) 675 WP_015714894.1 hypothetical protein -
  ITP52_RS12410 (ITP52_12410) - 2478760..2479548 (-) 789 WP_015714893.1 membrane protein -
  ITP52_RS12415 (ITP52_12415) - 2479697..2480176 (-) 480 WP_015714892.1 hypothetical protein -
  ITP52_RS12420 (ITP52_12420) phrF 2480429..2480548 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  ITP52_RS12425 (ITP52_12425) rapF 2480532..2481677 (-) 1146 WP_015250985.1 response regulator aspartate phosphatase RapF Regulator
  ITP52_RS12435 (ITP52_12435) ywhK 2481907..2483262 (+) 1356 WP_043940225.1 YncE family protein -
  ITP52_RS12440 (ITP52_12440) ywhL 2483302..2484678 (+) 1377 WP_043940224.1 YncE family protein -
  ITP52_RS12445 (ITP52_12445) albG 2484683..2485384 (-) 702 WP_043940223.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  ITP52_RS12450 (ITP52_12450) albF 2485381..2486661 (-) 1281 WP_003227558.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45590.06 Da        Isoelectric Point: 5.0624

>NTDB_id=504905 ITP52_RS12425 WP_015250985.1 2480532..2481677(-) (rapF) [Bacillus subtilis strain SH1]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=504905 ITP52_RS12425 WP_015250985.1 2480532..2481677(-) (rapF) [Bacillus subtilis strain SH1]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

99.213

100

0.992
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572