Detailed information NTG0050488

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPSH417_RS00195
• Genome accession: NC_017739
• Coordinates: 34450..35415 (+)
• Length: 321 a.a.
• NCBI ID: WP_014661897.1
• Uniprot ID: -
• Organism: Helicobacter pylori Shi417
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29450..40415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH417_RS00170 (HPSH417_00155)	panD	30848..31198 (+)	351	WP_000142504.1	aspartate 1-decarboxylase	-
HPSH417_RS00175 (HPSH417_00160)	-	31209..31511 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPSH417_RS00180 (HPSH417_00165)	-	31511..32518 (+)	1008	WP_000468453.1	PDZ domain-containing protein	-
HPSH417_RS00185 (HPSH417_00170)	comB6	32526..33581 (+)	1056	WP_000786671.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSH417_RS08005	comB7	33597..33710 (+)	114	WP_001217864.1	hypothetical protein	Machinery gene
HPSH417_RS00190 (HPSH417_00175)	comB8	33707..34450 (+)	744	WP_000660502.1	type IV secretion system protein	Machinery gene
HPSH417_RS00195 (HPSH417_00180)	comB9	34450..35415 (+)	966	WP_014661897.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSH417_RS00200 (HPSH417_00185)	comB10	35408..36544 (+)	1137	WP_001045876.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSH417_RS00205 (HPSH417_00190)	-	36614..38026 (+)	1413	WP_000694822.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPSH417_RS00210 (HPSH417_00195)	gmd	38041..39186 (+)	1146	WP_000659885.1	GDP-mannose 4,6-dehydratase	-
HPSH417_RS00215 (HPSH417_00200)	-	39179..40111 (+)	933	WP_001002523.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 37044.60 Da
• Isoelectric Point: 9.4679

>NTDB_id=50488 HPSH417_RS00195 WP_014661897.1 34450..35415(+) (comB9) [Helicobacter pylori Shi417]
MRKVLYALVGFLLAFSALRADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDTNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKGNTLENTPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLWICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=50488 HPSH417_RS00195 WP_014661897.1 34450..35415(+) (comB9) [Helicobacter pylori Shi417]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAGAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATACTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGGAAATACCCTTGAAAATACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGTGGATTTGTTCTAAAAAATCC
AAGCTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.049	100	0.938