Detailed information NTG0050486

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPSH417_RS00185
• Genome accession: NC_017739
• Coordinates: 32526..33581 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786671.1
• Uniprot ID: -
• Organism: Helicobacter pylori Shi417
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 27526..38581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH417_RS00155 (HPSH417_00140)	-	27933..28346 (+)	414	WP_001023001.1	universal stress protein	-
HPSH417_RS00160 (HPSH417_00145)	-	28361..28636 (+)	276	WP_000784919.1	ATP-dependent Clp protease adaptor ClpS	-
HPSH417_RS00165 (HPSH417_00150)	-	28636..30858 (+)	2223	WP_001051545.1	AAA family ATPase	-
HPSH417_RS00170 (HPSH417_00155)	panD	30848..31198 (+)	351	WP_000142504.1	aspartate 1-decarboxylase	-
HPSH417_RS00175 (HPSH417_00160)	-	31209..31511 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPSH417_RS00180 (HPSH417_00165)	-	31511..32518 (+)	1008	WP_000468453.1	PDZ domain-containing protein	-
HPSH417_RS00185 (HPSH417_00170)	comB6	32526..33581 (+)	1056	WP_000786671.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSH417_RS08005	comB7	33597..33710 (+)	114	WP_001217864.1	hypothetical protein	Machinery gene
HPSH417_RS00190 (HPSH417_00175)	comB8	33707..34450 (+)	744	WP_000660502.1	type IV secretion system protein	Machinery gene
HPSH417_RS00195 (HPSH417_00180)	comB9	34450..35415 (+)	966	WP_014661897.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSH417_RS00200 (HPSH417_00185)	comB10	35408..36544 (+)	1137	WP_001045876.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSH417_RS00205 (HPSH417_00190)	-	36614..38026 (+)	1413	WP_000694822.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39641.58 Da
• Isoelectric Point: 9.0413

>NTDB_id=50486 HPSH417_RS00185 WP_000786671.1 32526..33581(+) (comB6) [Helicobacter pylori Shi417]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLLLAFGFFKTWRSVVIACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHVQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=50486 HPSH417_RS00185 WP_000786671.1 32526..33581(+) (comB6) [Helicobacter pylori Shi417]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGCTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGATTGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATGTGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTGGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.436	100	0.974