Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SII_RS02335 Genome accession   NC_022237
Coordinates   453296..456568 (+) Length   1090 a.a.
NCBI ID   WP_020998418.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 448296..461568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS02305 (SII_0455) - 448602..448994 (+) 393 WP_020998413.1 hypothetical protein -
  SII_RS02310 (SII_0456) - 448994..450211 (+) 1218 WP_020998414.1 hypothetical protein -
  SII_RS02315 (SII_0457) - 450193..450594 (+) 402 WP_020998415.1 hypothetical protein -
  SII_RS02320 (SII_0458) - 450572..450865 (+) 294 WP_020998416.1 hypothetical protein -
  SII_RS02325 (SII_0459) - 451070..451963 (+) 894 WP_003072123.1 ABC transporter ATP-binding protein -
  SII_RS02330 (SII_0460) - 451960..453174 (+) 1215 WP_020998417.1 ABC transporter permease -
  SII_RS02335 (SII_0461) rexB 453296..456568 (+) 3273 WP_020998418.1 ATP-dependent nuclease subunit B Machinery gene
  SII_RS02340 (SII_0462) rexA 456565..460245 (+) 3681 WP_020998419.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125443.46 Da        Isoelectric Point: 5.1773

>NTDB_id=50487 SII_RS02335 WP_020998418.1 453296..456568(+) (rexB) [Streptococcus intermedius C270]
MKLLYTDIRNPLTTILVKEAERLAQEGKRVFYIAPNSLSFEKERVVLSQLTHQASFAITVTRFTQMARYFVLNDIQQGSP
LDDIGLGMLFYKVLSEMDEKDLRVYGGIRTDAQFIQQLVELYHELQSAQMTFTDLEHLEEDEKKADFIKILQAVTQQINQ
SEFSSESNIMTFANHIMTGDVDKELQDLVLVIDGFTRFSAEEAYLVELLHSKGVEIVIGVYASEKAYRTSFREGNLYQAS
VDFLRHLADKYEVKPEHRLATPLDDAFGNISKLLESRYDFSDVDLELTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVEAYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLNQE
ELDLFEQYICFADIKGMGKFSKEFTHNQHQKFDLIRINHLRKEIVIPLLDFLKSRSQTAMGLLQNFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFASVFSASKIKLDDFLTLVQSGMLLSNYRTVPATVDVVTVQSYDLIEPLSSPF
VYAIGLTQDYFPKIVQNKSLLSDEDRLLLNEATGEHSELVIATQENLKKNRFVALSLLNAATDRLVLSTPQIVNEIENNI
SSYLLELHEQPIALPIEVKRPQATSDDIGTYRGLLARIIELNQGEIDKERSLSDKDQTFWAVAVRVLRKRLENEGVSIPN
VTSSLETETLSDQTLQVLYPSHQVFLLSTSALTEFYRNQYAYFLKYVLALQDEMTIHPDARSHGNFLHRVFEKVMQDSSS
EQFDYRLEKAIQETSQEAEFKEIYTENAVALFAHEVLLDTARATGLVLEKNDLVDTIQEEAVFGQEDVNFLSLSDGRKLQ
IRGKVDRIDRLRSNNSLGIVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQEKWADDGTQLFGAMYLQMANPLVPLAKTK
SYDDTVKEAMKILEYKGLFLSDQAHQLNNLYNKKKVNLLSQEELETLLAYNALLYRRAAEQILAGHFKINPYTENGKSIA
PFVEQYKSITGFEANLHLSRARHLVKLDKHSAGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=50487 SII_RS02335 WP_020998418.1 453296..456568(+) (rexB) [Streptococcus intermedius C270]
ATGAAATTACTTTACACAGATATTCGCAATCCCTTAACAACGATTTTGGTGAAAGAAGCAGAGCGCTTGGCACAGGAAGG
TAAGCGCGTGTTTTATATTGCTCCTAACTCTCTTTCATTTGAAAAGGAGAGAGTAGTTTTAAGCCAGCTCACTCATCAAG
CGTCCTTTGCTATTACAGTGACGCGTTTTACCCAGATGGCACGCTATTTTGTCCTCAATGATATACAGCAAGGTAGCCCA
TTAGATGATATTGGTCTGGGAATGTTATTTTACAAAGTCTTGTCAGAAATGGATGAGAAGGACTTGCGAGTGTATGGCGG
TATCCGCACGGATGCACAATTTATTCAGCAGTTGGTTGAACTTTATCATGAGTTGCAGAGTGCTCAGATGACGTTCACGG
ATTTGGAACATCTGGAAGAAGATGAGAAGAAAGCAGATTTCATCAAGATTTTGCAGGCTGTTACACAGCAGATCAATCAG
AGTGAGTTTAGTTCTGAATCAAATATTATGACCTTTGCCAATCATATAATGACAGGTGATGTAGATAAGGAATTACAAGA
TTTAGTCTTGGTGATTGATGGCTTTACGCGTTTTTCTGCTGAGGAAGCCTACTTGGTTGAGCTACTGCATAGCAAGGGAG
TGGAAATTGTTATTGGTGTTTATGCAAGTGAAAAAGCATATCGTACAAGTTTTCGAGAGGGAAATCTCTATCAAGCTAGT
GTAGATTTCTTACGCCATTTGGCAGATAAATATGAAGTGAAGCCTGAGCATAGACTAGCAACACCATTAGATGATGCATT
TGGAAATATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAGAGTTAACGGAGCAGGATCGCTCGC
ATGTGCAGATTTGGTCAACAGTCAATCAAAAGGAAGAATTAGAATATGTGGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTAGGAGATGTGGAAGCGTATCATTTACAGTTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTCTATGGTCATTTAAACCAAGAA
GAGTTAGACTTGTTTGAGCAATATATCTGCTTTGCAGATATAAAAGGAATGGGTAAGTTTTCTAAGGAATTTACTCACAA
TCAACATCAAAAATTTGATCTCATTCGCATCAATCACTTAAGAAAAGAAATAGTCATTCCTCTTTTGGATTTTTTAAAAT
CTCGTAGTCAAACAGCAATGGGGTTACTTCAAAATTTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAGGAAGTTTGGAAAGCTTTTTGTCATGTTTTGGAACA
GTTTGCCAGTGTCTTTTCAGCCAGCAAGATTAAGCTAGATGATTTTTTGACCTTGGTGCAGTCGGGAATGCTGTTATCTA
ATTATCGGACTGTTCCAGCAACAGTAGATGTCGTAACTGTTCAGTCTTATGATTTAATTGAGCCTTTGTCGAGTCCTTTT
GTCTATGCTATTGGTTTGACCCAAGATTATTTTCCAAAAATTGTCCAAAATAAGAGTCTTTTATCAGATGAAGATCGTTT
ATTGTTAAATGAAGCGACAGGTGAGCACTCAGAATTGGTGATTGCTACTCAGGAAAATCTTAAGAAAAATCGTTTTGTCG
CCTTGTCACTTCTGAATGCGGCAACAGACAGATTAGTTCTCTCTACTCCTCAGATTGTCAATGAAATAGAAAACAATATT
TCTTCCTATTTACTAGAACTACATGAACAACCAATTGCTTTGCCAATTGAAGTGAAGCGTCCACAGGCAACGAGTGATGA
TATTGGTACTTACCGCGGTTTATTGGCAAGGATTATTGAATTAAATCAAGGAGAGATTGACAAAGAGCGTTCTTTGTCTG
ATAAAGACCAGACTTTTTGGGCAGTTGCCGTACGAGTTTTGCGCAAAAGATTAGAAAATGAAGGTGTTTCGATTCCTAAT
GTAACATCAAGTCTTGAAACAGAGACTTTGTCAGATCAGACCTTACAGGTTCTTTATCCGTCTCATCAAGTATTTTTACT
ATCAACTTCAGCCTTGACAGAATTCTATCGTAATCAGTATGCTTATTTTTTGAAGTATGTCCTAGCTCTACAAGATGAAA
TGACGATCCATCCAGATGCGCGCAGTCATGGAAATTTTCTGCATCGTGTGTTTGAAAAAGTTATGCAAGATTCATCAAGT
GAGCAGTTTGATTATCGGCTAGAAAAAGCTATTCAAGAAACGAGCCAGGAAGCGGAATTTAAAGAGATTTATACTGAAAA
TGCAGTAGCTTTATTTGCGCATGAAGTGTTGCTTGATACGGCGCGTGCAACAGGGCTTGTTTTAGAAAAAAATGATTTGG
TAGATACTATTCAAGAAGAAGCAGTTTTTGGACAAGAAGATGTGAACTTTTTAAGCTTATCAGATGGACGTAAGCTTCAA
ATTCGCGGGAAAGTTGACCGAATTGACCGATTGAGGAGTAATAACAGTTTAGGAATTGTAGATTATAAATCAAGTGATAC
GAATTTTGATTTTCAAAAATTTTTTAATGGCTTAAATTCTCAATTGCCAACCTATCTAGCGGCGTTGAAGCAAGAAAAGT
GGGCAGATGATGGTACGCAGCTTTTTGGAGCTATGTATTTACAGATGGCTAACCCACTTGTGCCTTTAGCTAAAACGAAG
TCATACGATGATACGGTCAAAGAAGCGATGAAAATTCTGGAATATAAGGGCTTGTTTTTATCTGATCAAGCTCATCAGCT
CAATAACTTGTATAATAAAAAGAAAGTCAATTTATTAAGTCAAGAAGAACTAGAAACTTTGTTAGCTTATAATGCACTCT
TGTACCGTCGTGCTGCCGAGCAGATATTGGCAGGGCATTTTAAGATTAATCCTTATACAGAAAATGGCAAAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCGATTACGGGCTTTGAAGCCAATCTTCACCTTTCTAGAGCCCGACATTTGGTTAAGCT
AGATAAGCACTCAGCAGGTGAAAAAAAACGTCAAGCGTGGATAGAAAAGATGAAGGAGGAGCTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.869

100

0.563

Multiple sequence alignment