Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HCW_RS04550 Genome accession   NC_017737
Coordinates   984013..984813 (+) Length   266 a.a.
NCBI ID   WP_014661047.1    Uniprot ID   I0EMK8
Organism   Helicobacter cetorum MIT 00-7128     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 979013..989813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCW_RS04530 (HCW_04530) - 979256..981868 (-) 2613 WP_014661043.1 phosphoenolpyruvate carboxylase -
  HCW_RS04535 (HCW_04535) ilvC 981952..982944 (+) 993 WP_014661044.1 ketol-acid reductoisomerase -
  HCW_RS04540 (HCW_04540) minD 982955..983761 (+) 807 WP_014661045.1 septum site-determining protein MinD -
  HCW_RS04545 (HCW_04545) minE 983758..984000 (+) 243 WP_014661046.1 cell division topological specificity factor MinE -
  HCW_RS04550 (HCW_04550) dprA 984013..984813 (+) 801 WP_014661047.1 DNA-processing protein DprA Machinery gene
  HCW_RS04555 (HCW_04555) dprB 984810..985247 (+) 438 WP_014661048.1 Holliday junction resolvase RuvX Machinery gene
  HCW_RS04560 (HCW_04560) - 985287..986444 (-) 1158 WP_014661049.1 N-6 DNA methylase -
  HCW_RS04565 (HCW_04565) - 986441..987025 (-) 585 WP_014661050.1 restriction endonuclease subunit S -
  HCW_RS04570 (HCW_04570) - 987626..988429 (+) 804 WP_014661051.1 hypothetical protein -
  HCW_RS04575 (HCW_04575) - 988426..989421 (+) 996 WP_014661052.1 hypothetical protein -
  HCW_RS04580 (HCW_04580) - 989432..989800 (+) 369 WP_014661053.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29944.79 Da        Isoelectric Point: 9.6506

>NTDB_id=50473 HCW_RS04550 WP_014661047.1 984013..984813(+) (dprA) [Helicobacter cetorum MIT 00-7128]
MKSGFQYHVLESIPKVFDTLKDPPKKLYFVGNTRLLNTPLKVAIIGTRRPNPYSKQHTITLARELSKSGASIVSGGALGV
DIIAQENALPNTIMLSPCSLDLIYPASNAKVIQKIAKNGLILSEYEKDFMPFKSSFLARNRLVIALSDMVIIPQADLFSG
SMSSARLAQKYQKPLFVLPQRLNESEGTNELLEKKQAKGIYNIQNFINTLLKDYHLKEAEQIKDEFLEYCAKNPNYEEAY
LKYGDKLLEYELSGKIKRINHSVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=50473 HCW_RS04550 WP_014661047.1 984013..984813(+) (dprA) [Helicobacter cetorum MIT 00-7128]
ATGAAAAGTGGCTTTCAATACCATGTTTTAGAGAGCATTCCTAAGGTTTTTGATACTCTCAAAGACCCCCCTAAAAAACT
CTATTTTGTAGGCAATACTAGGCTTTTAAACACCCCTTTGAAAGTGGCTATTATAGGCACTAGAAGACCTAATCCTTATA
GCAAGCAACACACTATTACTCTAGCTAGAGAATTGTCTAAAAGTGGTGCTAGTATTGTGAGTGGGGGAGCGTTAGGGGTG
GATATTATCGCTCAAGAAAATGCCTTGCCTAATACAATTATGCTTTCACCTTGTAGTTTAGACTTAATCTATCCTGCAAG
TAATGCTAAAGTGATTCAAAAAATCGCAAAAAATGGTTTGATTCTAAGCGAATATGAAAAAGATTTTATGCCTTTTAAAA
GCTCTTTTTTGGCACGAAATCGCTTGGTTATCGCACTAAGTGATATGGTTATTATCCCCCAAGCAGATTTATTTAGTGGC
TCTATGAGTAGTGCGAGATTAGCTCAAAAATATCAAAAACCTTTATTTGTTTTGCCCCAACGCCTAAATGAAAGCGAAGG
CACCAATGAGCTTTTGGAAAAAAAGCAAGCTAAAGGCATTTATAACATTCAAAATTTTATTAACACTCTTTTAAAAGATT
ACCACTTAAAAGAAGCAGAACAAATCAAAGATGAATTTTTAGAATACTGTGCGAAAAATCCTAACTATGAAGAAGCGTAT
CTAAAATATGGCGACAAACTTTTAGAATACGAATTATCAGGCAAAATCAAACGCATAAACCATAGCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0EMK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

85.714

100

0.857
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.472

86.09

0.417

Multiple sequence alignment