Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HCW_RS04555 Genome accession   NC_017737
Coordinates   984810..985247 (+) Length   145 a.a.
NCBI ID   WP_014661048.1    Uniprot ID   I0EMK9
Organism   Helicobacter cetorum MIT 00-7128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 979810..990247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCW_RS04535 (HCW_04535) ilvC 981952..982944 (+) 993 WP_014661044.1 ketol-acid reductoisomerase -
  HCW_RS04540 (HCW_04540) minD 982955..983761 (+) 807 WP_014661045.1 septum site-determining protein MinD -
  HCW_RS04545 (HCW_04545) minE 983758..984000 (+) 243 WP_014661046.1 cell division topological specificity factor MinE -
  HCW_RS04550 (HCW_04550) dprA 984013..984813 (+) 801 WP_014661047.1 DNA-processing protein DprA Machinery gene
  HCW_RS04555 (HCW_04555) dprB 984810..985247 (+) 438 WP_014661048.1 Holliday junction resolvase RuvX Machinery gene
  HCW_RS04560 (HCW_04560) - 985287..986444 (-) 1158 WP_014661049.1 N-6 DNA methylase -
  HCW_RS04565 (HCW_04565) - 986441..987025 (-) 585 WP_014661050.1 restriction endonuclease subunit S -
  HCW_RS04570 (HCW_04570) - 987626..988429 (+) 804 WP_014661051.1 hypothetical protein -
  HCW_RS04575 (HCW_04575) - 988426..989421 (+) 996 WP_014661052.1 hypothetical protein -
  HCW_RS04580 (HCW_04580) - 989432..989800 (+) 369 WP_014661053.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16410.06 Da        Isoelectric Point: 7.7495

>NTDB_id=50474 HCW_RS04555 WP_014661048.1 984810..985247(+) (dprB) [Helicobacter cetorum MIT 00-7128]
MILACDVGLKRIGLAILLEGIILPLEPILRKNRNQASRDLSNLLREKNIKVLVVGKPSESYVDTNIRIKHFITLLDFKGE
IVFVNEDCSSMEALENLEHLGRKNKQTAQKDGRLDSLSACRILERYVNEFSQNSIAQEMVTQTSL

Nucleotide


Download         Length: 438 bp        

>NTDB_id=50474 HCW_RS04555 WP_014661048.1 984810..985247(+) (dprB) [Helicobacter cetorum MIT 00-7128]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGTTTGGCTATTCTTTTAGAGGGTATTATCTTACCTTTAGAGCC
GATTTTGCGCAAGAATAGGAATCAAGCTTCTAGGGATTTAAGCAATTTGTTGAGAGAAAAAAACATTAAAGTGCTAGTGG
TGGGTAAGCCTAGCGAAAGTTATGTGGATACAAACATTCGCATCAAGCATTTTATTACGCTTTTAGACTTTAAGGGCGAA
ATTGTTTTTGTTAATGAGGATTGCTCTAGTATGGAAGCGCTTGAAAACTTAGAGCATTTAGGTAGGAAAAATAAACAAAC
AGCCCAAAAAGATGGGCGTTTGGATTCATTAAGTGCATGCAGGATTTTAGAACGCTATGTAAATGAGTTTAGTCAAAACT
CAATAGCACAAGAAATGGTAACACAAACATCGTTATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0EMK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

78.947

91.724

0.724

Multiple sequence alignment