Detailed information NTG0504719

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Azoinq_RS04610
• Genome accession: NZ_CP064782
• Coordinates: 1033957..1034814 (+)
• Length: 285 a.a.
• NCBI ID: WP_216131795.1
• Uniprot ID: A0A975XVI9
• Organism: Azospira inquinata strain Azo-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1028957..1039814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Azoinq_RS04595 (Azoinq_04595)	-	1029924..1030766 (+)	843	WP_216131803.1	inner membrane protein YpjD	-
Azoinq_RS04600 (Azoinq_04600)	pilB	1030946..1032661 (+)	1716	WP_216131801.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Azoinq_RS04605 (Azoinq_04605)	pilC	1032695..1033933 (+)	1239	WP_216131798.1	type II secretion system F family protein	Machinery gene
Azoinq_RS04610 (Azoinq_04610)	pilD	1033957..1034814 (+)	858	WP_216131795.1	A24 family peptidase	Machinery gene
Azoinq_RS04615 (Azoinq_04615)	-	1034913..1035161 (+)	249	WP_216131792.1	FmdB family zinc ribbon protein	-
Azoinq_RS04620 (Azoinq_04620)	-	1035161..1035784 (+)	624	WP_216132211.1	DUF502 domain-containing protein	-
Azoinq_RS04625 (Azoinq_04625)	aspS	1035807..1037621 (+)	1815	WP_216131789.1	aspartate--tRNA ligase	-
Azoinq_RS04630 (Azoinq_04630)	-	1037621..1038010 (+)	390	WP_216131786.1	ribonuclease domain-containing protein	-
Azoinq_RS04635 (Azoinq_04635)	-	1038024..1038437 (+)	414	WP_216131782.1	barstar family protein	-
Azoinq_RS04640 (Azoinq_04640)	nudB	1038442..1038891 (+)	450	WP_216131780.1	dihydroneopterin triphosphate diphosphatase	-
Azoinq_RS04645 (Azoinq_04645)	-	1038888..1039112 (-)	225	WP_216131776.1	cysteine-rich CWC family protein	-
Azoinq_RS04650 (Azoinq_04650)	-	1039246..1039674 (+)	429	WP_216131775.1	Hsp20/alpha crystallin family protein	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 30831.74 Da
• Isoelectric Point: 7.5434

>NTDB_id=504719 Azoinq_RS04610 WP_216131795.1 1033957..1034814(+) (pilD) [Azospira inquinata strain Azo-3]
MVEIWQLPNSLGPTLLAALLGLLVGSFLNVVIYRLPKMLERDWQGQCAELRGLPPPEGEPFNLATPRSRCPHCDHLISAK
ENIPILSYLLLGGKCAACGAPISIRYPLVEGLTALLSGFAIWIFGANGAGLGALCLLWALIALTWIDFDTQLLPDCITLP
LLWLGLAFNLYGTYTSLEAAVIGAMAGYLSLWTVYWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLTILLSSFVGAV
VGIGLMVATKRGRNVPIPFGPYLATAGLLALFWGKDLTHAYLRLL

Nucleotide

• Length: 858 bp

>NTDB_id=504719 Azoinq_RS04610 WP_216131795.1 1033957..1034814(+) (pilD) [Azospira inquinata strain Azo-3]
ATGGTTGAAATCTGGCAATTACCTAATTCCCTGGGACCAACGCTACTGGCCGCCTTATTAGGCCTGTTGGTCGGCAGTTT
CTTAAACGTCGTGATTTACCGTCTCCCCAAGATGCTGGAGCGGGACTGGCAGGGGCAATGCGCGGAATTGCGGGGGCTGC
CGCCGCCGGAAGGGGAGCCATTCAATCTGGCCACACCCCGCTCCCGTTGCCCCCACTGCGATCACCTCATTTCCGCAAAA
GAGAACATTCCCATCCTTAGCTACCTGCTGTTGGGGGGGAAATGTGCCGCCTGTGGCGCTCCCATTTCCATACGCTATCC
CCTAGTGGAGGGCCTGACCGCCCTGCTTTCGGGCTTTGCCATCTGGATTTTCGGGGCTAATGGGGCGGGGCTGGGCGCCC
TGTGCCTGCTCTGGGCCCTTATTGCCCTGACCTGGATCGACTTCGACACCCAGCTGTTACCTGACTGCATCACCCTGCCC
CTGTTATGGCTCGGGCTGGCTTTCAATCTTTACGGCACCTACACCTCCCTGGAAGCCGCCGTCATCGGCGCCATGGCCGG
GTATCTGAGCCTATGGACCGTTTATTGGCTGTTTAAACTGGCGACGGGCAAGGAAGGCATGGGCTACGGAGATTTCAAGC
TACTGGCGGCCATCGGCGCCTGGCTGGGCTGGCAGATGTTGCCCCTGACCATTCTGCTCTCCTCCTTCGTCGGCGCCGTG
GTAGGCATCGGCCTGATGGTGGCCACCAAACGGGGCCGCAATGTGCCCATTCCCTTCGGACCCTACCTGGCCACAGCCGG
ATTGCTGGCGCTTTTTTGGGGCAAGGACCTGACCCACGCCTATCTGCGCCTGCTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.353	95.439	0.547
pilD	Vibrio campbellii strain DS40M4	53.846	95.789	0.516
pilD	Acinetobacter baumannii D1279779	53.731	94.035	0.505
pilD	Acinetobacter nosocomialis M2	53.358	94.035	0.502
pilD	Neisseria gonorrhoeae MS11	55.512	89.123	0.495