Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HCD_RS02130 Genome accession   NC_017735
Coordinates   442605..443405 (-) Length   266 a.a.
NCBI ID   WP_014658971.1    Uniprot ID   I0ER79
Organism   Helicobacter cetorum MIT 99-5656     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 437605..448405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCD_RS02110 (HCD_02100) - 439083..439979 (+) 897 WP_014658967.1 RluA family pseudouridine synthase -
  HCD_RS02115 (HCD_02105) - 440391..440975 (+) 585 WP_014658968.1 restriction endonuclease subunit S -
  HCD_RS02120 (HCD_02110) - 440972..442129 (+) 1158 WP_014658969.1 N-6 DNA methylase -
  HCD_RS02125 (HCD_02115) dprB 442201..442608 (-) 408 WP_014658970.1 Holliday junction resolvase RuvX Machinery gene
  HCD_RS02130 (HCD_02120) dprA 442605..443405 (-) 801 WP_014658971.1 DNA-processing protein DprA Machinery gene
  HCD_RS02135 (HCD_02125) minE 443418..443654 (-) 237 WP_014658972.1 cell division topological specificity factor MinE -
  HCD_RS02140 (HCD_02130) minD 443651..444457 (-) 807 WP_014658973.1 septum site-determining protein MinD -
  HCD_RS02145 (HCD_02135) ilvC 444466..445458 (-) 993 WP_014658974.1 ketol-acid reductoisomerase -
  HCD_RS02155 (HCD_02140) - 445731..446513 (+) 783 WP_014658975.1 NAD+ synthase -
  HCD_RS02160 (HCD_02145) - 446510..447448 (+) 939 WP_014658976.1 tetraacyldisaccharide 4'-kinase -
  HCD_RS02165 (HCD_02150) pseH 447381..447923 (-) 543 WP_041594875.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29644.39 Da        Isoelectric Point: 8.7608

>NTDB_id=50449 HCD_RS02130 WP_014658971.1 442605..443405(-) (dprA) [Helicobacter cetorum MIT 99-5656]
MKSNFQYHVLESIPKAFDILKDPPKKLYFVGDTELLNAPLKVAIVGTRRPTPYSKQHTITLARELAKSGAIIVSGGALGV
DIIAQENALPNTIMLSPCSLDLIYPASNAKIIQKIAQNGLILSEYEKDSIAHKGSFLARNRLVIALSDAVIIPQADLLSG
SMSSARLAQKYQKPLFVLPQRLNESEGTNELLEKNQAKGIYNIQNFINTLLKDYHLKELDIAKDEFLEYCAKNPSYEEAY
LKYGDKLLEYELLGKIKRINHSVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=50449 HCD_RS02130 WP_014658971.1 442605..443405(-) (dprA) [Helicobacter cetorum MIT 99-5656]
ATGAAAAGCAACTTTCAATACCATGTTTTAGAGAGCATTCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT
CTATTTTGTAGGCGATACTGAGCTTTTAAACGCACCTTTAAAAGTGGCTATTGTAGGCACAAGAAGACCCACCCCTTATA
GCAAACAACACACCATCACTCTAGCTAGAGAGCTTGCTAAAAGTGGTGCAATCATTGTGAGTGGGGGAGCGTTAGGAGTA
GATATTATTGCTCAAGAAAATGCCTTGCCTAATACCATTATGCTCTCGCCTTGTAGTTTGGACTTAATCTATCCTGCAAG
CAATGCTAAAATCATTCAAAAAATCGCTCAAAATGGCTTGATTTTAAGCGAATATGAAAAAGACTCTATCGCTCATAAAG
GCTCATTTTTAGCTAGAAATCGTCTGGTTATTGCATTAAGTGATGCAGTCATTATTCCGCAAGCGGATTTGCTTAGTGGC
TCTATGAGCAGTGCAAGATTGGCTCAAAAATATCAAAAGCCTTTGTTTGTTTTACCCCAACGCCTAAATGAAAGCGAAGG
CACTAATGAGCTTTTAGAAAAAAATCAAGCTAAAGGCATTTATAACATTCAAAATTTTATTAACACCCTTTTAAAAGATT
ATCATTTGAAAGAATTAGATATAGCCAAAGATGAATTTTTAGAATATTGTGCGAAAAACCCTAGCTATGAAGAAGCGTAT
CTAAAATATGGCGACAAGCTTTTAGAATACGAATTATTAGGCAAAATCAAGCGCATAAATCATAGCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0ER79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

86.842

100

0.868
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.345

86.09

0.425

Multiple sequence alignment