Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HCD_RS02125 Genome accession   NC_017735
Coordinates   442201..442608 (-) Length   135 a.a.
NCBI ID   WP_014658970.1    Uniprot ID   -
Organism   Helicobacter cetorum MIT 99-5656     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 437201..447608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCD_RS02105 (HCD_02095) recJ 437536..439083 (+) 1548 WP_014658966.1 single-stranded-DNA-specific exonuclease RecJ -
  HCD_RS02110 (HCD_02100) - 439083..439979 (+) 897 WP_014658967.1 RluA family pseudouridine synthase -
  HCD_RS02115 (HCD_02105) - 440391..440975 (+) 585 WP_014658968.1 restriction endonuclease subunit S -
  HCD_RS02120 (HCD_02110) - 440972..442129 (+) 1158 WP_014658969.1 N-6 DNA methylase -
  HCD_RS02125 (HCD_02115) dprB 442201..442608 (-) 408 WP_014658970.1 Holliday junction resolvase RuvX Machinery gene
  HCD_RS02130 (HCD_02120) dprA 442605..443405 (-) 801 WP_014658971.1 DNA-processing protein DprA Machinery gene
  HCD_RS02135 (HCD_02125) minE 443418..443654 (-) 237 WP_014658972.1 cell division topological specificity factor MinE -
  HCD_RS02140 (HCD_02130) minD 443651..444457 (-) 807 WP_014658973.1 septum site-determining protein MinD -
  HCD_RS02145 (HCD_02135) ilvC 444466..445458 (-) 993 WP_014658974.1 ketol-acid reductoisomerase -
  HCD_RS02155 (HCD_02140) - 445731..446513 (+) 783 WP_014658975.1 NAD+ synthase -
  HCD_RS02160 (HCD_02145) - 446510..447448 (+) 939 WP_014658976.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15191.80 Da        Isoelectric Point: 9.4109

>NTDB_id=50448 HCD_RS02125 WP_014658970.1 442201..442608(-) (dprB) [Helicobacter cetorum MIT 99-5656]
MILACDVGLKRIGLAILLEGVILPLESILRKNRNQASKDLSHLLKEKGVTTLVVGKPSESYVDTNIRIKHFITLLDFKGE
IVFINEDNSSIEAYEDLGHLGKKNKQIAQKDGRLDSLSACRILERYVKSYLIKIQ

Nucleotide


Download         Length: 408 bp        

>NTDB_id=50448 HCD_RS02125 WP_014658970.1 442201..442608(-) (dprB) [Helicobacter cetorum MIT 99-5656]
ATGATTTTAGCATGCGATGTGGGGCTAAAACGCATTGGTTTAGCCATTCTTTTAGAAGGGGTTATTTTGCCTTTAGAGTC
GATTTTACGCAAGAATAGAAATCAAGCCTCTAAGGATTTAAGCCATTTATTGAAAGAAAAGGGCGTTACAACTCTAGTGG
TGGGTAAGCCTAGCGAAAGTTATGTGGATACAAACATTCGCATTAAGCATTTTATTACGCTTTTAGACTTTAAGGGCGAA
ATTGTTTTTATCAATGAAGATAACTCTAGTATAGAAGCCTATGAAGATTTAGGGCATTTAGGCAAGAAAAATAAGCAAAT
CGCCCAAAAAGATGGGCGTTTGGACTCATTAAGTGCGTGCAGGATTTTAGAACGCTATGTAAAATCTTATTTAATCAAAA
TTCAATAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

78.626

97.037

0.763

Multiple sequence alignment