Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HV827_RS11620 Genome accession   NZ_CP064644
Coordinates   2442771..2443280 (-) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain UMCG336     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2437771..2448280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV827_RS11580 (HV827_11485) - 2437818..2438090 (-) 273 WP_002505293.1 helix-turn-helix domain-containing protein -
  HV827_RS11585 (HV827_11490) - 2438126..2438329 (-) 204 WP_002445790.1 helix-turn-helix transcriptional regulator -
  HV827_RS11590 (HV827_11495) - 2438464..2439255 (+) 792 WP_002505294.1 helix-turn-helix domain-containing protein -
  HV827_RS11595 (HV827_11500) - 2439394..2439927 (+) 534 WP_002505295.1 Ltp family lipoprotein -
  HV827_RS11600 (HV827_11505) - 2439975..2440517 (+) 543 WP_002505296.1 hypothetical protein -
  HV827_RS11605 (HV827_11510) - 2440538..2441755 (+) 1218 WP_002505297.1 site-specific integrase -
  HV827_RS11610 (HV827_11515) - 2441874..2442389 (+) 516 WP_142346438.1 hypothetical protein -
  HV827_RS11615 (HV827_11520) rpsR 2442484..2442726 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  HV827_RS11620 (HV827_11525) ssbA 2442771..2443280 (-) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  HV827_RS11625 (HV827_11530) rpsF 2443303..2443599 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  HV827_RS11630 (HV827_11535) - 2443984..2444793 (+) 810 WP_001831342.1 GH25 family lysozyme -
  HV827_RS11635 (HV827_11540) - 2444867..2445058 (+) 192 WP_001831355.1 hypothetical protein -
  HV827_RS11640 (HV827_11545) ychF 2445291..2446388 (-) 1098 WP_001831336.1 redox-regulated ATPase YchF -
  HV827_RS11645 (HV827_11550) - 2446400..2446603 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  HV827_RS11650 (HV827_11555) - 2446624..2447499 (-) 876 WP_002468622.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=503964 HV827_RS11620 WP_001831333.1 2442771..2443280(-) (ssbA) [Staphylococcus epidermidis strain UMCG336]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=503964 HV827_RS11620 WP_001831333.1 2442771..2443280(-) (ssbA) [Staphylococcus epidermidis strain UMCG336]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379