Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HWI17_RS11585 | Genome accession | NZ_CP064622 |
| Coordinates | 2438478..2438987 (-) | Length | 169 a.a. |
| NCBI ID | WP_001831333.1 | Uniprot ID | A0A2G7I1N0 |
| Organism | Staphylococcus epidermidis strain UMCG344 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2424760..2440500 | 2438478..2438987 | within | 0 |
Gene organization within MGE regions
Location: 2424760..2440500
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HWI17_RS11485 | - | 2424760..2425494 (-) | 735 | WP_012104246.1 | Panacea domain-containing protein | - |
| HWI17_RS11490 (HWI17_11405) | - | 2425508..2426158 (-) | 651 | WP_012085746.1 | hypothetical protein | - |
| HWI17_RS11495 (HWI17_11410) | - | 2426331..2426825 (-) | 495 | WP_107362606.1 | terminase small subunit | - |
| HWI17_RS11500 (HWI17_11415) | - | 2426885..2427571 (-) | 687 | WP_002505286.1 | hypothetical protein | - |
| HWI17_RS11505 (HWI17_11420) | - | 2427591..2428124 (-) | 534 | WP_002505287.1 | hypothetical protein | - |
| HWI17_RS11510 (HWI17_11425) | - | 2428137..2428475 (-) | 339 | WP_002499985.1 | hypothetical protein | - |
| HWI17_RS11515 (HWI17_11430) | - | 2428817..2429458 (-) | 642 | WP_002505288.1 | pathogenicity island protein | - |
| HWI17_RS11520 (HWI17_11435) | - | 2429472..2429837 (-) | 366 | WP_002505289.1 | hypothetical protein | - |
| HWI17_RS11525 (HWI17_11440) | - | 2430167..2431876 (-) | 1710 | WP_002505290.1 | DUF927 domain-containing protein | - |
| HWI17_RS11530 (HWI17_11445) | - | 2431891..2432763 (-) | 873 | WP_002505291.1 | primase alpha helix C-terminal domain-containing protein | - |
| HWI17_RS11535 (HWI17_11450) | tscT | 2432852..2433163 (-) | 312 | WP_002485637.1 | type II toxin-antitoxin system toxin TscT | - |
| HWI17_RS11540 (HWI17_11455) | - | 2433147..2433374 (-) | 228 | WP_002505292.1 | hypothetical protein | - |
| HWI17_RS11545 (HWI17_11460) | - | 2433525..2433797 (-) | 273 | WP_002505293.1 | helix-turn-helix domain-containing protein | - |
| HWI17_RS11550 (HWI17_11465) | - | 2433833..2434036 (-) | 204 | WP_002445790.1 | helix-turn-helix transcriptional regulator | - |
| HWI17_RS11555 (HWI17_11470) | - | 2434171..2434962 (+) | 792 | WP_002505294.1 | helix-turn-helix domain-containing protein | - |
| HWI17_RS11560 (HWI17_11475) | - | 2435101..2435634 (+) | 534 | WP_002505295.1 | Ltp family lipoprotein | - |
| HWI17_RS11565 (HWI17_11480) | - | 2435682..2436224 (+) | 543 | WP_002505296.1 | hypothetical protein | - |
| HWI17_RS11570 (HWI17_11485) | - | 2436245..2437462 (+) | 1218 | WP_002505297.1 | site-specific integrase | - |
| HWI17_RS11575 (HWI17_11490) | - | 2437512..2438096 (+) | 585 | WP_139723331.1 | hypothetical protein | - |
| HWI17_RS11580 (HWI17_11495) | rpsR | 2438191..2438433 (-) | 243 | WP_001831354.1 | 30S ribosomal protein S18 | - |
| HWI17_RS11585 (HWI17_11500) | ssbA | 2438478..2438987 (-) | 510 | WP_001831333.1 | single-stranded DNA-binding protein | Machinery gene |
| HWI17_RS11590 (HWI17_11505) | rpsF | 2439010..2439306 (-) | 297 | WP_001831345.1 | 30S ribosomal protein S6 | - |
| HWI17_RS11595 (HWI17_11510) | - | 2439691..2440500 (+) | 810 | WP_001831342.1 | GH25 family lysozyme | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18680.20 Da Isoelectric Point: 4.9056
>NTDB_id=503703 HWI17_RS11585 WP_001831333.1 2438478..2438987(-) (ssbA) [Staphylococcus epidermidis strain UMCG344]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF
Nucleotide
Download Length: 510 bp
>NTDB_id=503703 HWI17_RS11585 WP_001831333.1 2438478..2438987(-) (ssbA) [Staphylococcus epidermidis strain UMCG344]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
64.607 |
100 |
0.68 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.172 |
100 |
0.568 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
62.722 |
0.379 |