Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HWI28_RS11520 Genome accession   NZ_CP064580
Coordinates   2420059..2420568 (-) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain UMCG355     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2403347..2422081 2420059..2420568 within 0


Gene organization within MGE regions


Location: 2403347..2422081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI28_RS11400 (HWI28_11320) - 2403347..2403601 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  HWI28_RS11405 (HWI28_11325) - 2403823..2404083 (+) 261 WP_001830921.1 hypothetical protein -
  HWI28_RS11410 - 2404197..2404369 (+) 173 Protein_2200 XRE family transcriptional regulator -
  HWI28_RS11415 (HWI28_11330) - 2404784..2405425 (-) 642 WP_000855537.1 fusidic acid resistance EF-G-binding protein FusB -
  HWI28_RS11420 - 2406341..2407075 (-) 735 WP_012104246.1 Panacea domain-containing protein -
  HWI28_RS11425 (HWI28_11345) - 2407089..2407739 (-) 651 WP_012085746.1 hypothetical protein -
  HWI28_RS11430 (HWI28_11350) - 2407912..2408406 (-) 495 WP_107362606.1 terminase small subunit -
  HWI28_RS11435 (HWI28_11355) - 2408466..2409152 (-) 687 WP_002505286.1 hypothetical protein -
  HWI28_RS11440 (HWI28_11360) - 2409172..2409705 (-) 534 WP_002505287.1 hypothetical protein -
  HWI28_RS11445 (HWI28_11365) - 2409718..2410056 (-) 339 WP_002499985.1 hypothetical protein -
  HWI28_RS11450 (HWI28_11370) - 2410398..2411039 (-) 642 WP_002505288.1 pathogenicity island protein -
  HWI28_RS11455 (HWI28_11375) - 2411053..2411418 (-) 366 WP_002505289.1 hypothetical protein -
  HWI28_RS11460 (HWI28_11380) - 2411748..2413457 (-) 1710 WP_002505290.1 DUF927 domain-containing protein -
  HWI28_RS11465 (HWI28_11385) - 2413472..2414344 (-) 873 WP_002505291.1 primase alpha helix C-terminal domain-containing protein -
  HWI28_RS11470 (HWI28_11390) tscT 2414433..2414744 (-) 312 WP_002485637.1 type II toxin-antitoxin system toxin TscT -
  HWI28_RS11475 (HWI28_11395) - 2414728..2414955 (-) 228 WP_002505292.1 hypothetical protein -
  HWI28_RS11480 (HWI28_11400) - 2415106..2415378 (-) 273 WP_002505293.1 helix-turn-helix domain-containing protein -
  HWI28_RS11485 (HWI28_11405) - 2415414..2415617 (-) 204 WP_002445790.1 helix-turn-helix transcriptional regulator -
  HWI28_RS11490 (HWI28_11410) - 2415752..2416543 (+) 792 WP_002505294.1 helix-turn-helix domain-containing protein -
  HWI28_RS11495 (HWI28_11415) - 2416682..2417215 (+) 534 WP_002505295.1 Ltp family lipoprotein -
  HWI28_RS11500 (HWI28_11420) - 2417263..2417805 (+) 543 WP_002505296.1 hypothetical protein -
  HWI28_RS11505 (HWI28_11425) - 2417826..2419043 (+) 1218 WP_002505297.1 site-specific integrase -
  HWI28_RS11510 (HWI28_11430) - 2419093..2419677 (+) 585 WP_139723331.1 hypothetical protein -
  HWI28_RS11515 (HWI28_11435) rpsR 2419772..2420014 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  HWI28_RS11520 (HWI28_11440) ssbA 2420059..2420568 (-) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  HWI28_RS11525 (HWI28_11445) rpsF 2420591..2420887 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  HWI28_RS11530 (HWI28_11450) - 2421272..2422081 (+) 810 WP_001831342.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=503287 HWI28_RS11520 WP_001831333.1 2420059..2420568(-) (ssbA) [Staphylococcus epidermidis strain UMCG355]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=503287 HWI28_RS11520 WP_001831333.1 2420059..2420568(-) (ssbA) [Staphylococcus epidermidis strain UMCG355]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGAGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379