Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KPF73_RS03050 Genome accession   NZ_CP076507
Coordinates   585166..585939 (+) Length   257 a.a.
NCBI ID   WP_032584684.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R16.0174     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 580166..590939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF73_RS03035 (KPF73_03035) - 581015..582949 (-) 1935 WP_002934608.1 ribonuclease R family protein -
  KPF73_RS03040 (KPF73_03040) ilvC 583068..584090 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  KPF73_RS03045 (KPF73_03045) - 584094..585176 (+) 1083 WP_002934609.1 divergent polysaccharide deacetylase family protein -
  KPF73_RS03050 (KPF73_03050) dprA 585166..585939 (+) 774 WP_032584684.1 DNA-processing protein DprA Machinery gene
  KPF73_RS03055 (KPF73_03055) dprB 585936..586319 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  KPF73_RS03060 (KPF73_03060) - 586348..587187 (+) 840 WP_074484747.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KPF73_RS03065 (KPF73_03065) msrA 587363..587860 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KPF73_RS03070 (KPF73_03070) ppa 587901..588419 (-) 519 WP_002867724.1 inorganic diphosphatase -
  KPF73_RS03075 (KPF73_03075) adk 588429..589007 (-) 579 WP_002859580.1 adenylate kinase -
  KPF73_RS03080 (KPF73_03080) aspS 589004..590755 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28776.59 Da        Isoelectric Point: 7.6510

>NTDB_id=502935 KPF73_RS03050 WP_032584684.1 585166..585939(+) (dprA) [Campylobacter jejuni strain R16.0174]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYGNALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=502935 KPF73_RS03050 WP_032584684.1 585166..585939(+) (dprA) [Campylobacter jejuni strain R16.0174]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGGAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459