Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   KPF73_RS03055 Genome accession   NZ_CP076507
Coordinates   585936..586319 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain R16.0174     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580936..591319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF73_RS03035 (KPF73_03035) - 581015..582949 (-) 1935 WP_002934608.1 ribonuclease R family protein -
  KPF73_RS03040 (KPF73_03040) ilvC 583068..584090 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  KPF73_RS03045 (KPF73_03045) - 584094..585176 (+) 1083 WP_002934609.1 divergent polysaccharide deacetylase family protein -
  KPF73_RS03050 (KPF73_03050) dprA 585166..585939 (+) 774 WP_032584684.1 DNA-processing protein DprA Machinery gene
  KPF73_RS03055 (KPF73_03055) dprB 585936..586319 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  KPF73_RS03060 (KPF73_03060) - 586348..587187 (+) 840 WP_074484747.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KPF73_RS03065 (KPF73_03065) msrA 587363..587860 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KPF73_RS03070 (KPF73_03070) ppa 587901..588419 (-) 519 WP_002867724.1 inorganic diphosphatase -
  KPF73_RS03075 (KPF73_03075) adk 588429..589007 (-) 579 WP_002859580.1 adenylate kinase -
  KPF73_RS03080 (KPF73_03080) aspS 589004..590755 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=502936 KPF73_RS03055 WP_002852281.1 585936..586319(+) (dprB) [Campylobacter jejuni strain R16.0174]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=502936 KPF73_RS03055 WP_002852281.1 585936..586319(+) (dprB) [Campylobacter jejuni strain R16.0174]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TTATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449