Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KPF74_RS03060 Genome accession   NZ_CP076505
Coordinates   584957..585730 (+) Length   257 a.a.
NCBI ID   WP_052774570.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R16.4752     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 579957..590730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF74_RS03045 (KPF74_03045) - 580806..582740 (-) 1935 WP_182101490.1 ribonuclease R family protein -
  KPF74_RS03050 (KPF74_03050) ilvC 582859..583881 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  KPF74_RS03055 (KPF74_03055) - 583885..584967 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  KPF74_RS03060 (KPF74_03060) dprA 584957..585730 (+) 774 WP_052774570.1 DNA-processing protein DprA Machinery gene
  KPF74_RS03065 (KPF74_03065) dprB 585727..586110 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  KPF74_RS03070 (KPF74_03070) - 586139..586978 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KPF74_RS03075 (KPF74_03075) msrA 587153..587650 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KPF74_RS03080 (KPF74_03080) ppa 587692..588210 (-) 519 WP_002867724.1 inorganic diphosphatase -
  KPF74_RS03085 (KPF74_03085) adk 588220..588798 (-) 579 WP_002859580.1 adenylate kinase -
  KPF74_RS03090 (KPF74_03090) aspS 588795..590546 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28776.55 Da        Isoelectric Point: 7.0848

>NTDB_id=502889 KPF74_RS03060 WP_052774570.1 584957..585730(+) (dprA) [Campylobacter jejuni strain R16.4752]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=502889 KPF74_RS03060 WP_052774570.1 584957..585730(+) (dprA) [Campylobacter jejuni strain R16.4752]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGGAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459