Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   KPF74_RS03065 Genome accession   NZ_CP076505
Coordinates   585727..586110 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain R16.4752     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 580727..591110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF74_RS03045 (KPF74_03045) - 580806..582740 (-) 1935 WP_182101490.1 ribonuclease R family protein -
  KPF74_RS03050 (KPF74_03050) ilvC 582859..583881 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  KPF74_RS03055 (KPF74_03055) - 583885..584967 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  KPF74_RS03060 (KPF74_03060) dprA 584957..585730 (+) 774 WP_052774570.1 DNA-processing protein DprA Machinery gene
  KPF74_RS03065 (KPF74_03065) dprB 585727..586110 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  KPF74_RS03070 (KPF74_03070) - 586139..586978 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  KPF74_RS03075 (KPF74_03075) msrA 587153..587650 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  KPF74_RS03080 (KPF74_03080) ppa 587692..588210 (-) 519 WP_002867724.1 inorganic diphosphatase -
  KPF74_RS03085 (KPF74_03085) adk 588220..588798 (-) 579 WP_002859580.1 adenylate kinase -
  KPF74_RS03090 (KPF74_03090) aspS 588795..590546 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=502890 KPF74_RS03065 WP_002858579.1 585727..586110(+) (dprB) [Campylobacter jejuni strain R16.4752]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=502890 KPF74_RS03065 WP_002858579.1 585727..586110(+) (dprB) [Campylobacter jejuni strain R16.4752]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTACCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449