Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HWI40_RS11220 Genome accession   NZ_CP064540
Coordinates   2349714..2350223 (-) Length   169 a.a.
NCBI ID   WP_001831333.1    Uniprot ID   A0A2G7I1N0
Organism   Staphylococcus epidermidis strain UMCG367     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2344714..2355223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI40_RS11180 (HWI40_11065) - 2344926..2345549 (+) 624 WP_002437175.1 NDxxF motif lipoprotein -
  HWI40_RS11185 (HWI40_11070) - 2345769..2346146 (+) 378 WP_002437185.1 hypothetical protein -
  HWI40_RS11190 (HWI40_11075) - 2346505..2347095 (-) 591 WP_002437189.1 histidine phosphatase family protein -
  HWI40_RS11195 (HWI40_11080) - 2347116..2347748 (-) 633 WP_002437191.1 LysE family translocator -
  HWI40_RS11200 - 2347911..2348000 (+) 90 Protein_2155 hypothetical protein -
  HWI40_RS11205 (HWI40_11085) - 2348222..2348476 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  HWI40_RS11210 (HWI40_11090) - 2348698..2348958 (+) 261 WP_002437194.1 hypothetical protein -
  HWI40_RS11215 (HWI40_11095) rpsR 2349427..2349669 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  HWI40_RS11220 (HWI40_11100) ssbA 2349714..2350223 (-) 510 WP_001831333.1 single-stranded DNA-binding protein Machinery gene
  HWI40_RS11225 (HWI40_11105) rpsF 2350246..2350542 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  HWI40_RS11230 (HWI40_11110) - 2350927..2351736 (+) 810 WP_002437208.1 GH25 family lysozyme -
  HWI40_RS11235 (HWI40_11115) - 2351810..2352001 (+) 192 WP_001831355.1 hypothetical protein -
  HWI40_RS11240 (HWI40_11120) ychF 2352234..2353331 (-) 1098 WP_001831336.1 redox-regulated ATPase YchF -
  HWI40_RS11245 (HWI40_11125) - 2353343..2353546 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  HWI40_RS11250 (HWI40_11130) - 2353567..2354442 (-) 876 WP_001832526.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18680.20 Da        Isoelectric Point: 4.9056

>NTDB_id=502876 HWI40_RS11220 WP_001831333.1 2349714..2350223(-) (ssbA) [Staphylococcus epidermidis strain UMCG367]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=502876 HWI40_RS11220 WP_001831333.1 2349714..2350223(-) (ssbA) [Staphylococcus epidermidis strain UMCG367]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAGTTCCTTGAACCTAAAAA
TGCACAACATGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7I1N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.172

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379