Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   RSAU_RS07985 Genome accession   NC_022222
Coordinates   1626448..1627050 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus subsp. aureus 6850     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1621448..1632050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RSAU_RS07965 (RSAU_001499) yajC 1622944..1623204 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  RSAU_RS07970 (RSAU_001500) tgt 1623223..1624362 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  RSAU_RS07975 (RSAU_001501) queA 1624385..1625410 (-) 1026 WP_020977315.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RSAU_RS07980 (RSAU_001502) ruvB 1625412..1626416 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  RSAU_RS07985 (RSAU_001503) ruvA 1626448..1627050 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  RSAU_RS07990 (RSAU_001504) - 1627064..1627519 (-) 456 WP_000368902.1 ACT domain-containing protein -
  RSAU_RS07995 (RSAU_001505) obgE 1627532..1628824 (-) 1293 WP_000496098.1 GTPase ObgE -
  RSAU_RS08000 (RSAU_001506) rpmA 1629310..1629594 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  RSAU_RS08005 (RSAU_001507) - 1629606..1629926 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  RSAU_RS08010 (RSAU_001508) rplU 1629932..1630241 (-) 310 Protein_1547 50S ribosomal protein L21 -
  RSAU_RS08015 (RSAU_001509) mreD 1630477..1631007 (-) 531 WP_020977316.1 rod shape-determining protein MreD -
  RSAU_RS08020 (RSAU_001510) mreC 1631007..1631849 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=50243 RSAU_RS07985 WP_000271547.1 1626448..1627050(-) (ruvA) [Staphylococcus aureus subsp. aureus 6850]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=50243 RSAU_RS07985 WP_000271547.1 1626448..1627050(-) (ruvA) [Staphylococcus aureus subsp. aureus 6850]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTACAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment